WGLab / DeepModLinks
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
☆104Updated 2 years ago
Alternatives and similar repositories for DeepMod
Users that are interested in DeepMod are comparing it to the libraries listed below
Sorting:
- Detecting methylation using signal-level features from Nanopore sequencing reads☆116Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Research release basecalling models and configurations☆115Updated 4 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 2 months ago
- Python programs for processing GFF3 files☆99Updated last year
- Variant calling tool for long-read sequencing data☆111Updated 6 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆107Updated 3 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆61Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆136Updated 3 weeks ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆93Updated 2 months ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- a tool for inferring species tree from sequencing reads☆151Updated 3 weeks ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆123Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆127Updated last year
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- PHAST☆75Updated this week
- Error correction for Illumina RNA-seq reads☆67Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆86Updated 2 weeks ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- SV detection tool for nanopore sequence reads☆93Updated 5 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆102Updated 7 months ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆78Updated 2 years ago