haotianteng / BoostNanoLinks
A segmentation toolkit for segment the Nanopore RNA signal.
☆19Updated 3 months ago
Alternatives and similar repositories for BoostNano
Users that are interested in BoostNano are comparing it to the libraries listed below
Sorting:
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆28Updated 3 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated 2 months ago
- Python client library for Guppy☆31Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- GUI for inspecting POD5 files☆29Updated 5 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- ☆30Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- A repository for collecting GPU basecalling stats☆34Updated this week
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- A program for assessing the T2T genome continuity☆77Updated last month
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆58Updated last week
- De novo construction of isoforms from long-read data☆28Updated 6 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆31Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆13Updated this week
- Pan-Genomic Matching Statistics☆52Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago