Alternatives and similar repositories for ont_m6a_detection:

Users that are interested in ont_m6a_detection are comparing it to the libraries listed below

• RouhanifardLab / PsiNanopore
  ☆10Updated last year
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 3 years ago
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 6 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆16Updated last year
• MarioniLab / CELLOseq
  Transposable element expression at unique loci in single cells with CELLO-seq
  ☆8Updated 9 months ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 4 months ago
• KHP-Informatics / DNAscanv2
  DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…
  ☆14Updated 10 months ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆15Updated 3 months ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• czhu / FulQuant
  FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data
  ☆9Updated 2 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• WGLab / AmpBinner
  A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
  ☆10Updated 4 months ago
• gagneurlab / splicemap
  ☆20Updated 5 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 5 years ago
• flemingtonlab / SpliceTools
  ☆17Updated 8 months ago
• zhailab / polyAcaller
  ☆10Updated 4 years ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆20Updated last year
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆15Updated 11 months ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 3 months ago
• hellosunking / Msuite2
  Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance
  ☆10Updated 2 months ago