Alternatives and similar repositories for read_until_api

Users that are interested in read_until_api are comparing it to the libraries listed below

• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 6 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆124Updated 3 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆184Updated last week
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆96Updated last year
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated this week
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 5 months ago
• SorenKarst / longread_umi
  ☆80Updated 5 years ago
• sirselim / jetson_nanopore_sequencing
  A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
  ☆111Updated last year
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 5 years ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆220Updated last week
• artic-network / fieldbioinformatics
  The ARTIC fieldbioinformatics pipeline
  ☆127Updated last month
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆117Updated 8 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated 3 weeks ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆108Updated 10 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆162Updated 3 years ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆175Updated last year
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆86Updated 7 months ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 3 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 3 months ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆128Updated last year
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆128Updated 3 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆152Updated last week
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆208Updated 2 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆162Updated this week
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆177Updated 2 years ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆155Updated 2 months ago