Read Until client library for Nanopore Sequencing
☆108Sep 25, 2024Updated last year
Alternatives and similar repositories for read_until_api
Users that are interested in read_until_api are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆198Feb 25, 2026Updated 6 months ago
- Protobuf and gRPC specifications for the MinKNOW API☆73Jul 22, 2026Updated last month
- Python client library for Guppy☆32Aug 15, 2022Updated 4 years ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Raw nanopore signal mapper that enables real-time targeted sequencing☆532Mar 5, 2024Updated 2 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 6 months ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Mar 5, 2023Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 3 weeks ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆86Mar 2, 2026Updated 6 months ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆112May 10, 2024Updated 2 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a signal-level demultiplexer for Oxford Nanopore reads☆124Jan 18, 2021Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Nov 4, 2021Updated 4 years ago
- Nanopore sequence read simulator☆311Mar 12, 2026Updated 6 months ago
- VBZ compression plugin for nanopore signal data☆44Apr 7, 2025Updated last year
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Signal-level algorithms for MinION data☆602Aug 5, 2023Updated 3 years ago
- ☆12Dec 26, 2018Updated 7 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- Dynamic, adaptive sampling during nanopore sequencing☆40Jul 24, 2026Updated last month
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆527May 20, 2026Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 4 months ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago