nanoporetech / ont_fast5_api
Oxford Nanopore Technologies fast5 API software
☆153Updated last year
Alternatives and similar repositories for ont_fast5_api:
Users that are interested in ont_fast5_api are comparing it to the libraries listed below
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆114Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- A bioinformatics tool for working with modified bases☆185Updated last week
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆276Updated last week
- ☆91Updated last week
- Read Until client library for Nanopore Sequencing☆104Updated 7 months ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ☆119Updated 2 weeks ago
- ☆204Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆184Updated 11 months ago
- Methylation/modified base calling separated from basecalling.☆171Updated 7 months ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- ☆185Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- Jasmine: SV Merging Across Samples☆210Updated 4 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆149Updated 3 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆124Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆144Updated last month
- PEPPER-Margin-DeepVariant☆247Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 6 months ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233Updated last year
- a long read simulator that can imitate many types of read problems☆212Updated 9 months ago