nanoporetech / ont_fast5_apiLinks
Oxford Nanopore Technologies fast5 API software
☆154Updated last year
Alternatives and similar repositories for ont_fast5_api
Users that are interested in ont_fast5_api are comparing it to the libraries listed below
Sorting:
- Methylation/modified base calling separated from basecalling.☆179Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- A bioinformatics tool for working with modified bases☆212Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆302Updated last month
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆155Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 8 months ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆210Updated last month
- ☆134Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆276Updated 7 months ago
- A minimap2 frontend for PacBio native data formats☆204Updated 6 months ago
- Jasmine: SV Merging Across Samples☆225Updated 9 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- PEPPER-Margin-DeepVariant☆252Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Pod5: a high performance file format for nanopore reads.☆163Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆226Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆181Updated 2 weeks ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago