nanoporetech / scrappieLinks
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
☆93Updated 3 years ago
Alternatives and similar repositories for scrappie
Users that are interested in scrappie are comparing it to the libraries listed below
Sorting:
- Predictive kmer models for development use☆58Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆125Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- Analysis components from Oxford Nanopore Research☆94Updated 10 months ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- Read Until client library for Nanopore Sequencing☆104Updated 9 months ago
- Variant calling tool for long-read sequencing data☆111Updated 3 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- Research release basecalling models and configurations☆114Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago
- A complete diploid human genome☆121Updated 6 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆116Updated 2 years ago
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- ☆114Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated last year
- Python programs for processing GFF3 files☆98Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆86Updated 3 weeks ago
- Long-read mock community experiments☆105Updated 3 years ago
- ☆49Updated 8 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated 3 months ago
- SV caller for nanopore data☆91Updated 5 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated last month
- ☆116Updated last year