bartongroup / yanocompLinks
Yet another nanopore modification comparison tool
☆12Updated 3 years ago
Alternatives and similar repositories for yanocomp
Users that are interested in yanocomp are comparing it to the libraries listed below
Sorting:
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Updated 3 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 5 months ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- ☆26Updated 2 months ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆78Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 2 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Updated last week
- ☆24Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- ☆51Updated last year
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆57Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆26Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- ☆84Updated 10 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated this week
- Code for phasing SVs with SNPs☆53Updated 5 years ago
- Show pangenome graphs in an easy way☆57Updated 5 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago