rvolden / C3POa
Computational pipeline for calling consensi on R2C2 nanopore data
☆31Updated 2 years ago
Alternatives and similar repositories for C3POa:
Users that are interested in C3POa are comparing it to the libraries listed below
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- ☆46Updated 2 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 10 months ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 8 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆32Updated this week
- Version II of Mandalorion☆32Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆29Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- ☆48Updated 5 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆30Updated this week
- De novo clustering of long transcript reads into genes☆54Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆45Updated 7 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- Nanopore raw signal repeat detection pipeline☆45Updated last year