rvolden / C3POaLinks
Computational pipeline for calling consensi on R2C2 nanopore data
☆31Updated 3 years ago
Alternatives and similar repositories for C3POa
Users that are interested in C3POa are comparing it to the libraries listed below
Sorting:
- ☆49Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆46Updated 8 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated last week
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆45Updated 3 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆36Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated last year
- Long-read splice alignment with high accuracy☆63Updated last year
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆38Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- ☆24Updated last month
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- TIDDIT - structural variant calling☆76Updated 6 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago