liyu95 / DeepSimulator

Related projects: ⓘ

• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆114Updated 2 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆122Updated 7 months ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆102Updated 6 months ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆145Updated 6 months ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆108Updated 2 months ago
• hasindu2008 / f5c
  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
  ☆138Updated last week
• WGLab / DeepMod
  DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
  ☆99Updated last year
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆108Updated last year
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆98Updated 2 years ago
• nanoporetech / scrappie
  Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
  ☆90Updated 2 years ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆130Updated this week
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆233Updated last month
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆152Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆78Updated 2 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆124Updated 3 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆113Updated 2 years ago
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆231Updated this week
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆241Updated 8 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆102Updated 3 months ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 2 weeks ago
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆167Updated last month
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆123Updated 2 years ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆90Updated last year
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆51Updated last year
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆129Updated 3 years ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆195Updated 2 weeks ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆170Updated 3 months ago
• OpenGene / fastv
  An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…
  ☆110Updated 10 months ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆103Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆175Updated 4 months ago