Alternatives and similar repositories for wf-human-variation:

Users that are interested in wf-human-variation are comparing it to the libraries listed below

• epi2me-labs / wf-transcriptomes
  ☆91Updated 2 weeks ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆145Updated 2 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆185Updated 2 weeks ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆187Updated this week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆97Updated 4 years ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆102Updated this week
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆211Updated 4 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆137Updated 3 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆192Updated 2 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆147Updated last week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆128Updated this week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆81Updated 3 months ago
• jtlovell / GENESPACE
  ☆206Updated 3 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆147Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆80Updated last year
• parklab / bamsnap
  ☆120Updated 5 months ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆114Updated last month
• wdecoster / chopper
  ☆185Updated last week
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆141Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆212Updated 3 weeks ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆110Updated 2 weeks ago
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆97Updated 7 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last week
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆172Updated 3 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆124Updated 8 months ago