nanoporetech / duplex-toolsLinks
Splitting of sequence reads by internal adapter sequence search
☆51Updated 2 years ago
Alternatives and similar repositories for duplex-tools
Users that are interested in duplex-tools are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- Call select base modifications in PacBio HiFi reads☆13Updated 6 months ago
- ☆64Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- A local-haplotagging-based small and structural variant caller☆79Updated 2 weeks ago
- ☆78Updated last month
- ☆44Updated 8 years ago
- ☆117Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- A program for assessing the T2T genome continuity☆83Updated last week
- Neural network classification of TE☆92Updated 2 months ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- SRF: Satellite Repeat Finder☆97Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆108Updated last month
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆49Updated 9 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 5 months ago
- PacBio BAM toolkit☆46Updated 6 months ago
- Show pangenome graphs in an easy way☆56Updated 3 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆115Updated last week
- Tiberius is a deep learning gene finder.☆69Updated last week
- A program to call variants from genome alignment☆81Updated 4 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month