nanoporetech / duplex-toolsLinks
Splitting of sequence reads by internal adapter sequence search
☆51Updated 2 years ago
Alternatives and similar repositories for duplex-tools
Users that are interested in duplex-tools are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- ☆66Updated last month
- Simple pileup-based variant caller☆92Updated 5 months ago
- A program for assessing the T2T genome continuity☆87Updated 3 weeks ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- k-mer learning materials☆80Updated 7 months ago
- ☆79Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- ☆78Updated 5 years ago
- Tiberius is a deep learning gene finder.☆77Updated last week
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- SRF: Satellite Repeat Finder☆97Updated last year
- A list of software for pangenomics☆131Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆69Updated 7 months ago
- Neural network classification of TE☆96Updated 4 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆73Updated last month
- A program to call variants from genome alignment☆81Updated 5 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆112Updated 2 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated 3 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆51Updated 2 months ago
- ☆117Updated 3 weeks ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆44Updated 2 months ago