KolmogorovLab / hapdup
Pipeline to convert a haploid assembly into diploid
☆100Updated 3 months ago
Alternatives and similar repositories for hapdup:
Users that are interested in hapdup are comparing it to the libraries listed below
- ☆88Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆50Updated last year
- Call select base modifications in PacBio HiFi reads☆6Updated 2 months ago
- ☆61Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆100Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- ☆43Updated 8 years ago
- Simple pileup-based variant caller☆89Updated last week
- A list of software for pangenomics☆111Updated this week
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A program for assessing the T2T genome continuity☆71Updated last week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 2 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆67Updated 3 weeks ago
- A local-haplotagging-based small and structural variant caller☆74Updated 2 weeks ago
- Reference-free profiling of polyploid genomes☆115Updated 9 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated last week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- A program to call variants from genome alignment☆80Updated last year
- ☆76Updated 4 years ago
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆79Updated 5 months ago
- Collection of tools for the analysis of CpG data☆80Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- SRF: Satellite Repeat Finder☆95Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆115Updated 2 months ago
- Synteny Imager☆61Updated 8 months ago