KolmogorovLab / hapdupLinks
Pipeline to convert a haploid assembly into diploid
☆109Updated 11 months ago
Alternatives and similar repositories for hapdup
Users that are interested in hapdup are comparing it to the libraries listed below
Sorting:
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆118Updated this week
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆132Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- ☆145Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- A program for assessing the T2T genome continuity☆92Updated last month
- ☆119Updated 3 months ago
- A local-haplotagging-based small and structural variant caller☆92Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- ☆68Updated last week
- A list of software for pangenomics☆165Updated last week
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Phased assembly variant caller☆131Updated last year
- ☆45Updated 9 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- De novo assembly from Oxford Nanopore reads.☆88Updated 2 months ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- ☆121Updated 2 months ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated last week
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- ☆78Updated 5 years ago
- Evaluating genome assemblies☆113Updated last week