Pipeline to convert a haploid assembly into diploid
☆111Jan 23, 2025Updated last year
Alternatives and similar repositories for hapdup
Users that are interested in hapdup are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- De novo assembly from Oxford Nanopore reads.☆89Feb 16, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆242Feb 3, 2026Updated 2 months ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆33Nov 6, 2022Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated last week
- ☆102Apr 22, 2024Updated last year
- ☆126Apr 3, 2026Updated last week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆39Feb 15, 2025Updated last year
- VNTR annotation using motif selection☆42Mar 17, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Assembled Genomes Compressor☆179Mar 26, 2026Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 2 months ago
- ☆249Apr 1, 2026Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Read-based phasing of genomic variants, also called haplotype assembly☆412Dec 31, 2025Updated 3 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆72Updated this week
- Phased assembly variant caller☆140Dec 4, 2024Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Long read based human genomic structural variation detection with cuteSV☆282Mar 26, 2026Updated 2 weeks ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- An accurate GFF3/GTF lift over pipeline☆532Aug 1, 2023Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆915Apr 3, 2026Updated last week
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 weeks ago
- ☆59Dec 12, 2023Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 6 months ago
- Structural variation caller using third generation sequencing☆645Apr 2, 2026Updated last week
- Somatic structural variant caller for long-read data☆91Mar 3, 2026Updated last month
- ☆16Jan 10, 2022Updated 4 years ago