KolmogorovLab / hapdup
Pipeline to convert a haploid assembly into diploid
☆90Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for hapdup
- ☆69Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆55Updated last month
- Phased assembly variant caller☆97Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆93Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆96Updated 3 years ago
- Collection of tools for the analysis of CpG data☆72Updated 8 months ago
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆91Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆85Updated 2 weeks ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆67Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆81Updated 3 months ago
- Synteny Imager☆60Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆71Updated 5 months ago
- Simple pileup-based variant caller☆81Updated 7 months ago
- ☆57Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated 3 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- Pangenome-based genome inference☆111Updated this week
- ☆109Updated this week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆63Updated 8 months ago
- ☆42Updated 7 years ago
- TGS scaffolding☆45Updated 2 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated last month
- PacBio BAM toolkit☆38Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆105Updated last month
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago