epi2me-labs / wf-basecallingLinks
☆43Updated 3 weeks ago
Alternatives and similar repositories for wf-basecalling
Users that are interested in wf-basecalling are comparing it to the libraries listed below
Sorting:
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆120Updated last month
- ☆49Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A local-haplotagging-based small and structural variant caller☆79Updated 2 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- ☆78Updated 4 years ago
- List of genome assembly tools☆72Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- RNA modifications detection from Nanopore dRNA-Seq data☆86Updated last month
- Simple pileup-based variant caller☆92Updated 4 months ago
- ☆74Updated 7 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆32Updated last week
- ☆29Updated 3 months ago
- reference-free transcriptome assembly for short and long reads☆110Updated last year
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- A list of software for pangenomics☆125Updated last week
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- ☆116Updated last week
- Variant calling tool for long-read sequencing data☆112Updated 5 months ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 2 months ago