☆52Apr 10, 2026Updated 5 months ago
Alternatives and similar repositories for wf-basecalling
Users that are interested in wf-basecalling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆34Mar 9, 2026Updated 6 months ago
- ☆116Aug 5, 2026Updated last month
- ☆22Nov 24, 2025Updated 10 months ago
- ☆179Jul 20, 2026Updated 2 months ago
- Oxford Nanopore's Basecaller☆875Sep 3, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated last year
- ☆45Mar 13, 2026Updated 6 months ago
- Small variant calling for haploid samples☆59Mar 3, 2026Updated 6 months ago
- ☆51Jan 23, 2026Updated 8 months ago
- ☆22Jun 1, 2026Updated 3 months ago
- A bioinformatics tool for working with modified bases☆276Jul 14, 2026Updated 2 months ago
- Metagenomic classification of long-read sequencing data☆110Jan 22, 2026Updated 8 months ago
- ☆43Dec 15, 2025Updated 9 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 7 months ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- ☆14May 2, 2025Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Pod5: a high performance file format for nanopore reads.☆178Updated this week
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆121Jan 23, 2026Updated 8 months ago
- Tools for plotting methylation data in various ways☆198Sep 17, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 2 months ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated last month
- ☆14Sep 11, 2023Updated 3 years ago
- Ultra fast FASTQ and BAM processing, filtering, concatenation and sequencing QC/statistics.☆59Sep 16, 2026Updated last week
- De novo construction of isoforms from long-read data☆46Sep 9, 2026Updated 2 weeks ago
- Variant Interpretation Pipeline☆51Updated this week
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 months ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Extract methylation calls from long reads (ONT/ PacBio)☆25Sep 1, 2026Updated 3 weeks ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- VIGOR4☆24Aug 15, 2025Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆230Sep 11, 2026Updated 2 weeks ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 10 months ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 9 years ago
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago