epi2me-labs / wf-basecallingLinks
☆40Updated this week
Alternatives and similar repositories for wf-basecalling
Users that are interested in wf-basecalling are comparing it to the libraries listed below
Sorting:
- ☆78Updated 4 years ago
- ☆48Updated 10 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- Research release basecalling models and configurations☆113Updated last month
- ☆28Updated last month
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆104Updated 4 months ago
- List of genome assembly tools☆68Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- A list of software for pangenomics☆117Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated 3 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 4 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆62Updated last week