Alternatives and similar repositories for awesome-nanopore

Users that are interested in awesome-nanopore are comparing it to the libraries listed below

• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆282Updated 8 months ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆192Updated last week
• kcleal / gw
  Genome browser and variant annotation
  ☆385Updated 2 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆309Updated last month
• nextflow-io / training
  Nextflow training material
  ☆195Updated this week
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆225Updated 3 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆242Updated 4 years ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆237Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆213Updated 2 weeks ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆271Updated 2 years ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆509Updated 2 years ago
• usadellab / Trimmomatic
  ☆270Updated 2 weeks ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆319Updated 4 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆216Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆326Updated 6 months ago
• nanoporetech / tombo
  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
  ☆234Updated 2 years ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆275Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 3 months ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆348Updated 4 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆220Updated last month
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆276Updated last month
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆240Updated last week
• usadellab / Helixer
  Using Deep Learning to predict gene annotations
  ☆227Updated 2 weeks ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆146Updated 10 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last month
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆505Updated 2 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆384Updated 2 weeks ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆219Updated 3 weeks ago
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆284Updated 7 months ago