Alternatives and similar repositories for rerio

Users that are interested in rerio are comparing it to the libraries listed below

• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆126Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆196Updated 2 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆122Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆147Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆119Updated 2 weeks ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆173Updated last year
• lh3 / yak
  Yet another k-mer analyzer
  ☆149Updated 3 weeks ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 7 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆96Updated 3 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆124Updated 3 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last month
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated 2 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 4 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆136Updated last year
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago
• SorenKarst / longread_umi
  ☆79Updated 5 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆177Updated 4 years ago
• twolinin / longphase
  ☆119Updated last week
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated last month
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆101Updated last year
• comprna / METEORE
  Automatic DNA methylation detection from nanopore tools and their consensus model
  ☆80Updated 2 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 8 months ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆128Updated last year
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆128Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 3 months ago