nanoporetech / rerioLinks
Research release basecalling models and configurations
☆117Updated 8 months ago
Alternatives and similar repositories for rerio
Users that are interested in rerio are comparing it to the libraries listed below
Sorting:
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- Visualise and analyse nanopore (ONT) raw signals☆128Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆132Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆160Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆84Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Yet another k-mer analyzer☆158Updated last month
- Pangenome-based genome inference☆155Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 4 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- ☆81Updated 5 years ago
- Collection of tools for the analysis of CpG data☆106Updated 7 months ago
- ☆48Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 3 weeks ago
- Structural Variant Identification Method using Long Reads☆181Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- Constructing a pangenome gene graph☆204Updated 6 months ago
- A list of software for pangenomics☆173Updated 2 weeks ago
- ☆123Updated 3 weeks ago
- accurate LiftOver tool for new genome assemblies☆148Updated last year
- ☆52Updated 4 months ago
- Plotting tools for nanopore methylation data☆94Updated 6 months ago
- Tools for plotting methylation data in various ways☆170Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆168Updated last week
- source code for EVM☆122Updated last year
- Pipeline to convert a haploid assembly into diploid☆111Updated last year
- Same species annotation lift over pipeline.☆97Updated 2 years ago