Research release basecalling models and configurations
☆120May 20, 2026Updated 2 months ago
Alternatives and similar repositories for rerio
Users that are interested in rerio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆129Feb 16, 2024Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- Plotting tools for nanopore methylation data☆95Aug 3, 2026Updated last week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 5 months ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆120Jun 4, 2023Updated 3 years ago
- Oxford Nanopore's Basecaller☆860Jul 30, 2026Updated 2 weeks ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 5 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- An overview of all nanopack tools☆292Jun 2, 2023Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆387Jul 9, 2026Updated last month
- Sequence correction provided by ONT Research☆520May 20, 2026Updated 2 months ago
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Jun 24, 2021Updated 5 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Plotting scripts for long read sequencing data☆557Aug 3, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 4 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆673Jul 20, 2026Updated 3 weeks ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- A bioinformatics tool for working with modified bases☆272Jul 14, 2026Updated 3 weeks ago
- Pod5: a high performance file format for nanopore reads.☆176Jul 6, 2026Updated last month
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆292Jul 30, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆288Oct 18, 2024Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆198Feb 25, 2026Updated 5 months ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆168Aug 5, 2026Updated last week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Oct 25, 2021Updated 4 years ago
- Data and analysis for NA12878 genome on nanopore☆410Nov 22, 2022Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 3 weeks ago