Alternatives and similar repositories for rerio

Users that are interested in rerio are comparing it to the libraries listed below

• lh3 / pangene
  Constructing a pangenome gene graph
  ☆193Updated 2 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆122Updated last week
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆132Updated last year
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆135Updated last week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆155Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆141Updated last week
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆119Updated 2 weeks ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 10 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 4 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆121Updated 2 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆114Updated 8 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆158Updated 3 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• lh3 / yak
  Yet another k-mer analyzer
  ☆144Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆151Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆99Updated last month
• marbl / ModDotPlot
  ☆153Updated this week
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆109Updated 9 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆159Updated last week
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• twolinin / longphase
  ☆116Updated 3 months ago
• epi2me-labs / wf-basecalling
  ☆42Updated last week