A tool for generating consensus long-read assemblies for bacterial genomes
☆244Oct 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for Autocycler
Users that are interested in Autocycler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 2 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Ultra-fast preprocessing and quality control for long-read sequencing data☆243Sep 11, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆236May 9, 2026Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆332Oct 10, 2026Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Updated this week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Oct 21, 2026Updated last week
- An updated pipeline for pangenome investigation☆378Updated this week
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- geNomad: Identification of mobile genetic elements☆340Oct 14, 2026Updated 2 weeks ago
- Amplicon sequencing variants and taxonomic profiling from modern nanopore / HiFi long read amplicons.☆70Oct 10, 2026Updated 2 weeks ago
- Rapid & standardized genome annotation using protein structural information☆81Oct 14, 2026Updated 2 weeks ago
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- Read alignment statistics for metagenomics☆411Updated this week
- ☆158Jul 24, 2026Updated 3 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆262Oct 1, 2026Updated 3 weeks ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- Bioinformatics tool for Locus Visualisation☆175Mar 30, 2026Updated 7 months ago
- Fast DNA search and [host] depletion using minimizers☆128Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆270Oct 14, 2026Updated 2 weeks ago
- ☆39Oct 22, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- a long read simulator that can imitate many types of read problems☆308Jul 24, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 7 months ago
- quality filtering tool for long reads☆421Sep 17, 2025Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆157Jun 10, 2026Updated 4 months ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Oct 15, 2026Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year