Nanopore demultiplexing, QC and alignment pipeline
☆231Oct 7, 2026Updated last week
Alternatives and similar repositories for nanoseq
Users that are interested in nanoseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆171Aug 25, 2026Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆258Oct 2, 2026Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 7, 2026Updated last week
- Oxford Nanopore's Basecaller☆881Sep 3, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A small-RNA sequencing analysis pipeline☆101Oct 7, 2026Updated last week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆614Updated this week
- A curated list of awesome nanopore analysis tools.☆332May 20, 2026Updated 4 months ago
- RNA-seq analysis pipeline for detection of gene-fusions☆176Oct 8, 2026Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆165Sep 14, 2026Updated last month
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆165Aug 21, 2026Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Oct 8, 2026Updated last week
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNA modifications detection from Nanopore dRNA-Seq data☆88Aug 27, 2026Updated last month
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆107Aug 26, 2026Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆200Oct 7, 2026Updated last week
- Full-Length Alternative Isoform analysis of RNA☆258Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆393Oct 5, 2026Updated last week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,388Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated 2 years ago
- Quality control tools for nanopore sequencing data☆116Oct 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated last month
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆192Oct 8, 2026Updated last week
- An overview of all nanopack tools☆292Jun 2, 2023Updated 3 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆40Aug 2, 2024Updated 2 years ago
- gatk4 RNA variant calling pipeline☆61Oct 8, 2026Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆70Jan 19, 2026Updated 8 months ago
- k-mer similarity analysis pipeline☆24Oct 7, 2026Updated last week
- A post sequencing QC tool for Oxford Nanopore sequencers☆120Aug 26, 2026Updated last month
- ☆116Aug 5, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆529May 20, 2026Updated 4 months ago
- Simple bacterial assembly and annotation pipeline☆93Oct 8, 2026Updated last week
- Assembly and binning of metagenomes☆323Oct 8, 2026Updated last week
- Demultiplexing pipeline for sequencing data☆61Oct 8, 2026Updated last week
- Plotting scripts for long read sequencing data☆562Oct 1, 2026Updated 2 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 7 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago