nf-core / nanoseq
Nanopore demultiplexing, QC and alignment pipeline
☆189Updated this week
Alternatives and similar repositories for nanoseq:
Users that are interested in nanoseq are comparing it to the libraries listed below
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆133Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆259Updated 7 months ago
- Genome Assembly and Annotation Service code☆206Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 3 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆163Updated this week
- Genome browser and variant annotation☆290Updated this week
- A bioinformatics tool for working with modified bases☆163Updated 3 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆138Updated last year
- An overview of all nanopack tools☆230Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆215Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆255Updated 3 weeks ago
- Full-Length Alternative Isoform analysis of RNA☆216Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆247Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- ☆83Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆294Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆240Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆217Updated 3 weeks ago
- Annotation and Ranking of Structural Variation☆231Updated 2 weeks ago
- ☆110Updated last month
- A minimap2 frontend for PacBio native data formats☆178Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- TransDecoder source☆283Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆245Updated last year
- An accurate GFF3/GTF lift over pipeline☆460Updated last year
- Nextflow training material☆136Updated this week