Alternatives and similar repositories for nanoseq:

Users that are interested in nanoseq are comparing it to the libraries listed below

• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆136Updated 3 years ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 5 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆207Updated 3 weeks ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆247Updated last week
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆209Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆221Updated 4 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆300Updated last month
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆267Updated last month
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆143Updated last year
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆316Updated 9 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆296Updated last month
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆174Updated 2 weeks ago
• epi2me-labs / wf-transcriptomes
  ☆88Updated 2 months ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆160Updated last week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆285Updated 5 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆353Updated 2 years ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆170Updated last week
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆210Updated last week
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆236Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆207Updated last year
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆471Updated last year
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆267Updated 2 weeks ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆202Updated this week
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆220Updated last week
• jtlovell / GENESPACE
  ☆199Updated last month
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆264Updated last year
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆323Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆219Updated 2 months ago
• nextflow-io / training
  Nextflow training material
  ☆152Updated this week