WGLab / DeepMod2Links
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
☆61Updated 11 months ago
Alternatives and similar repositories for DeepMod2
Users that are interested in DeepMod2 are comparing it to the libraries listed below
Sorting:
- ☆52Updated 4 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- ☆49Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated this week
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated 2 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆68Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 5 months ago
- A program for assessing the T2T genome continuity☆92Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆128Updated last month
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆64Updated 3 weeks ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 5 months ago
- ☆49Updated 5 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆35Updated 3 months ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- ☆78Updated 5 years ago
- Simple pileup-based variant caller☆95Updated 9 months ago
- python plotly Circos from VCF☆40Updated last year
- Collection of tools for the analysis of CpG data☆105Updated 6 months ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆25Updated 2 years ago