DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
☆61Mar 5, 2025Updated 11 months ago
Alternatives and similar repositories for DeepMod2
Users that are interested in DeepMod2 are comparing it to the libraries listed below
Sorting:
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- ☆14Oct 5, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- ☆52Sep 27, 2025Updated 5 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 6 years ago
- Oxford Nanopore's Basecaller☆798Feb 19, 2026Updated last week
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆27Feb 5, 2026Updated 3 weeks ago
- ☆39Feb 22, 2023Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- ☆38Oct 6, 2025Updated 4 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- A bioinformatics tool for working with modified bases☆252Jan 19, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 2 months ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 6 months ago
- ☆29Feb 5, 2026Updated 3 weeks ago
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Detecting DNA methylation from PacBio CCS reads☆84Apr 8, 2025Updated 10 months ago
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 2 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆239Feb 3, 2026Updated 3 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- ☆17Feb 11, 2026Updated 2 weeks ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 8 months ago
- chloroplast genome assembly using long reads data☆14Jul 8, 2025Updated 7 months ago
- ☆15Aug 22, 2023Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆103Jan 28, 2026Updated last month
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 2 years ago
- Research release basecalling models and configurations☆117May 21, 2025Updated 9 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- a tool for simulating nanopore raw signal data☆73Jan 30, 2026Updated last month
- ☆22Feb 10, 2026Updated 2 weeks ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Basecalling configuration prediction through FASTQ files☆33Nov 24, 2025Updated 3 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago