DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
☆61Mar 5, 2025Updated last year
Alternatives and similar repositories for DeepMod2
Users that are interested in DeepMod2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Oct 5, 2023Updated 2 years ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- ☆10Mar 11, 2025Updated last year
- ☆53Sep 27, 2025Updated 7 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- Oxford Nanopore's Basecaller☆830Feb 19, 2026Updated 3 months ago
- A bioinformatics tool for working with modified bases☆265Apr 29, 2026Updated 3 weeks ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- ☆19Oct 20, 2025Updated 7 months ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆50Mar 5, 2023Updated 3 years ago
- Detecting DNA methylation from PacBio CCS reads☆84Apr 8, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Set of tools to manipulate and visualize modified base bam files☆61Aug 2, 2022Updated 3 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆105Mar 8, 2023Updated 3 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 8 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 5 months ago
- ☆41Oct 6, 2025Updated 7 months ago
- a tool for simulating nanopore raw signal data☆78Mar 4, 2026Updated 2 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆30Feb 5, 2026Updated 3 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆251Apr 13, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆39Feb 22, 2023Updated 3 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆105Jan 28, 2026Updated 3 months ago
- Tools for plotting methylation data in various ways☆190May 7, 2026Updated last week
- Research release basecalling models and configurations☆117May 21, 2025Updated 11 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 7 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 2 months ago
- ☆31Mar 3, 2026Updated 2 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Mar 31, 2025Updated last year
- Pod5: a high performance file format for nanopore reads.☆174Mar 31, 2026Updated last month
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- ☆25Dec 24, 2022Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- ☆85Jan 6, 2025Updated last year