WGLab / DeepMod2Links
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
☆53Updated 5 months ago
Alternatives and similar repositories for DeepMod2
Users that are interested in DeepMod2 are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- python plotly Circos from VCF☆38Updated last year
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated last month
- ☆49Updated last year
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆115Updated 5 months ago
- A program for assessing the T2T genome continuity☆83Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- ☆42Updated 6 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- Collection of tools for the analysis of CpG data☆90Updated last month
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆61Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆79Updated 2 weeks ago
- ☆23Updated 2 years ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Copy number caller for long read data including SNV utilization☆66Updated 4 months ago
- A list of software for pangenomics☆125Updated 2 weeks ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Visualise and analyse nanopore (ONT) raw signals☆120Updated last month
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- ☆33Updated 2 years ago
- Application of pan-genome for population☆108Updated 10 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- SRF: Satellite Repeat Finder☆97Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago