mkirsche / JasmineLinks
Jasmine: SV Merging Across Samples
☆228Updated 10 months ago
Alternatives and similar repositories for Jasmine
Users that are interested in Jasmine are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- Structural Variant Identification Method using Long Reads☆177Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆126Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- ☆136Updated 3 weeks ago
- Tools for plotting methylation data in various ways☆162Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆205Updated 3 weeks ago
- Pangenome-based genome inference☆149Updated 2 months ago
- Constructing a pangenome gene graph☆196Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- An ultra-fast and efficient genomic tool for coverage calculation☆159Updated 7 months ago
- A minimap2 frontend for PacBio native data formats☆205Updated last month
- Tandem repeat expansion detection or genotyping from long-read alignments☆128Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- accurate LiftOver tool for new genome assemblies☆136Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- haplotypic duplication identification tool☆260Updated last year
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Long read / genome alignment software☆303Updated 11 months ago
- Hierarchical Alignment Format☆172Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago