mkirsche / Jasmine
Jasmine: SV Merging Across Samples
☆209Updated 3 months ago
Alternatives and similar repositories for Jasmine:
Users that are interested in Jasmine are comparing it to the libraries listed below
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆147Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆142Updated last month
- ☆90Updated 3 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆184Updated 10 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆124Updated this week
- Pangenome-based genome inference☆127Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated this week
- Research release basecalling models and configurations☆110Updated 9 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆178Updated 2 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Fast and accurately polish the genome generated by long reads.☆220Updated 3 months ago
- Structural Variant Identification Method using Long Reads☆170Updated 3 years ago
- Comparison of multiple long read datasets☆125Updated last week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆225Updated 7 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆115Updated this week
- Constructing a pangenome gene graph☆184Updated last week
- Collection of tools for the analysis of CpG data☆80Updated 2 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 5 months ago
- Nanopore data assembler☆147Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆191Updated last month
- ☆118Updated this week
- ☆183Updated 2 weeks ago
- A bioinformatics tool for working with modified bases☆183Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆199Updated last year
- Phased assembly variant caller☆112Updated 4 months ago
- Bayesian genotyper for structural variants☆130Updated 4 years ago