Alternatives and similar repositories for Jasmine

Users that are interested in Jasmine are comparing it to the libraries listed below

• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆156Updated 6 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆144Updated 2 weeks ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆156Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• epi2me-labs / wf-human-variation
  ☆132Updated last week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆160Updated 2 weeks ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆171Updated 7 months ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆202Updated 6 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆195Updated 2 weeks ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆237Updated last year
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆197Updated 2 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆123Updated 3 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆141Updated last month
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆210Updated last week
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆139Updated 3 weeks ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆157Updated 2 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆157Updated 5 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 8 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆294Updated 3 weeks ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆296Updated 9 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆223Updated 6 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆232Updated 7 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆121Updated 3 weeks ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆160Updated 2 years ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆178Updated 10 months ago