Alternatives and similar repositories for Jasmine:

Users that are interested in Jasmine are comparing it to the libraries listed below

• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆132Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆178Updated 6 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last month
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆127Updated 3 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆182Updated 8 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆108Updated this week
• twolinin / longphase
  ☆107Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆131Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆140Updated 2 years ago
• epi2me-labs / wf-transcriptomes
  ☆81Updated 2 weeks ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆110Updated 3 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆104Updated 7 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆137Updated last year
• epi2me-labs / wf-human-variation
  ☆109Updated 3 weeks ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆217Updated 5 months ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆156Updated 2 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 2 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆155Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆107Updated last year
• ChaissonLab / LRA
  Long read aligner
  ☆114Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆171Updated this week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 3 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆95Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆130Updated 3 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago