Jasmine: SV Merging Across Samples
☆244Dec 20, 2024Updated last year
Alternatives and similar repositories for Jasmine
Users that are interested in Jasmine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant toolkit for VCFs☆401Updated this week
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- Application of pan-genome for population☆116Oct 26, 2025Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 2 weeks ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Annotation and Ranking of Structural Variation☆288Updated this week
- Long read based human genomic structural variation detection with cuteSV☆281Sep 30, 2025Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Pangenome-based genome inference☆162Dec 1, 2025Updated 3 months ago
- Structural variation caller using third generation sequencing☆639Mar 10, 2026Updated last week
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆139Sep 16, 2022Updated 3 years ago
- ☆125Feb 22, 2026Updated last month
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆165Mar 12, 2026Updated last week
- Evaluating genome assemblies☆118Mar 3, 2026Updated 2 weeks ago
- Long read / genome alignment software☆310Dec 16, 2025Updated 3 months ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆164Feb 26, 2025Updated last year
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 7 months ago
- Phased assembly variant caller☆135Dec 4, 2024Updated last year
- Synteny and Rearrangement Identifier☆454Updated this week
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Structural variation and indel detection by local assembly☆254Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 5 months ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated last week
- Evaluation and polishing workflows for T2T genome assemblies☆148Jul 7, 2025Updated 8 months ago
- the pangenome graph builder☆485Mar 14, 2026Updated last week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- ☆102Apr 22, 2024Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- Yet another k-mer analyzer☆162Dec 30, 2025Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago