evotools / nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
☆64Updated last week
Alternatives and similar repositories for nf-LO:
Users that are interested in nf-LO are comparing it to the libraries listed below
- python plotly Circos from VCF☆34Updated 9 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- A program for assessing the T2T genome continuity☆71Updated this week
- Transposable Elements MOvement detection using LOng reads☆21Updated 4 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- Simple pileup-based variant caller☆88Updated last week
- ☆27Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Variant annotation and merging pipeline☆33Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆39Updated last month
- ☆29Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- Set of tools to manipulate and visualize modified base bam files☆53Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated last year
- ☆79Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆73Updated this week
- ☆29Updated 7 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago