evotools / nf-LOLinks
A Nextflow workflow to generate lift over files for any pair of genomes
☆65Updated 2 months ago
Alternatives and similar repositories for nf-LO
Users that are interested in nf-LO are comparing it to the libraries listed below
Sorting:
- Error correction of ONT transcript reads☆58Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- ☆28Updated last month
- Structural variant caller☆54Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Simple pileup-based variant caller☆90Updated last month
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago
- Algorithm to detect germline and de novo transposon insertions☆28Updated last month
- Variant annotation and merging pipeline☆34Updated this week
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 2 months ago
- ☆29Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- Evolutionary Transcriptomics with R☆43Updated last week
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆63Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- PacBio BAM toolkit☆43Updated 3 months ago
- ☆30Updated 9 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆80Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- python plotly Circos from VCF☆36Updated 11 months ago