Alternatives and similar repositories for nf-LO:

Users that are interested in nf-LO are comparing it to the libraries listed below

• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆41Updated 6 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 5 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆74Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated last week
• Shians / NanoMethViz
  ☆27Updated this week
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 2 months ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆34Updated 10 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆54Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆33Updated last month
• farhangus / Sniffles2_plot
  ☆30Updated 8 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆34Updated last month
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 4 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆60Updated 6 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated 3 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆72Updated 3 weeks ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated last week
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated 3 weeks ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆26Updated this week
• kjenike / panagram
  ☆61Updated last month
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆40Updated this week
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated 10 months ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago