Alternatives and similar repositories for nf-LO:

Users that are interested in nf-LO are comparing it to the libraries listed below

• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 5 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated 5 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated last month
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆33Updated 9 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 3 months ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆69Updated 2 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆40Updated 3 weeks ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 3 weeks ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆31Updated 2 weeks ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 2 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆27Updated 11 months ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 2 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆39Updated this week
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆33Updated 2 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 3 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆47Updated last year
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆28Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆32Updated 2 months ago
• daewoooo / SVbyEye
  ☆77Updated 3 weeks ago