Structural Variant Identification Method using Genome Assemblies
☆142Sep 16, 2022Updated 3 years ago
Alternatives and similar repositories for svim-asm
Users that are interested in svim-asm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Phased assembly variant caller☆140Dec 4, 2024Updated last year
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Application of pan-genome for population☆118Oct 26, 2025Updated 7 months ago
- Long read based human genomic structural variation detection with cuteSV☆287Mar 26, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆468May 20, 2026Updated last week
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆33Jun 12, 2025Updated 11 months ago
- ☆286Dec 29, 2025Updated 5 months ago
- Structural variant toolkit for VCFs☆411May 22, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated 4 months ago
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 4 months ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Pangenome-based genome inference☆169May 7, 2026Updated 3 weeks ago
- k-mer based assembly evaluation☆343May 21, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆217Jan 17, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆395Apr 22, 2026Updated last month
- ☆128May 4, 2026Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆658May 18, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast and accurate coordinate conversion between assemblies☆119Oct 9, 2025Updated 7 months ago
- Chromosome-level scaffolding using multiple references☆167Sep 8, 2024Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆172Oct 29, 2025Updated 7 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- ☆34Mar 19, 2025Updated last year
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year