eldariont / svim-asmLinks
Structural Variant Identification Method using Genome Assemblies
☆127Updated 3 years ago
Alternatives and similar repositories for svim-asm
Users that are interested in svim-asm are comparing it to the libraries listed below
Sorting:
- Yet another k-mer analyzer☆151Updated last month
- Pipeline to convert a haploid assembly into diploid☆106Updated 9 months ago
- Application of pan-genome for population☆115Updated 3 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆96Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆114Updated this week
- High-precision TE Annotator☆137Updated 3 weeks ago
- Phased assembly variant caller☆129Updated 11 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆114Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Collection of tools for the analysis of CpG data☆97Updated 4 months ago
- Evaluating genome assemblies☆109Updated 2 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆106Updated this week
- ☆142Updated last week
- A list of software for pangenomics☆142Updated 2 weeks ago
- tomato graph pangenome☆84Updated 2 years ago
- Neural network classification of TE☆96Updated last month
- Make colorful identity heatmaps of genomic sequence☆125Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 9 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A program for assessing the T2T genome continuity☆89Updated last month
- Pangenome-based genome inference☆149Updated this week
- Identify and find telomeres, or telomeric repeats in a genome.☆148Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- Reference-free profiling of polyploid genomes☆131Updated last month
- A organelle de novo genome assembly toolkit☆70Updated 8 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated last week
- This is the standalone version of the EviAnn pipeline☆127Updated 3 weeks ago