eldariont / svim-asmLinks
Structural Variant Identification Method using Genome Assemblies
☆122Updated 2 years ago
Alternatives and similar repositories for svim-asm
Users that are interested in svim-asm are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- Collection of tools for the analysis of CpG data☆90Updated last month
- tomato graph pangenome☆84Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated 2 weeks ago
- Evaluating genome assemblies☆105Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆99Updated 6 months ago
- Phased assembly variant caller☆125Updated 8 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 2 months ago
- Pangenome-based genome inference☆139Updated 3 weeks ago
- Yet another k-mer analyzer☆144Updated last year
- High-precision TE Annotator☆124Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- Application of pan-genome for population☆108Updated 10 months ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- A list of software for pangenomics☆125Updated 2 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- source code for EVM☆116Updated 9 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆134Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Make colorful identity heatmaps of genomic sequence☆120Updated last year
- ☆137Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆115Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆123Updated last month
- Research release basecalling models and configurations☆115Updated 3 months ago
- ☆117Updated this week
- Neural network classification of TE☆92Updated 2 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆88Updated last year