eldariont / svim-asmLinks
Structural Variant Identification Method using Genome Assemblies
☆124Updated 3 years ago
Alternatives and similar repositories for svim-asm
Users that are interested in svim-asm are comparing it to the libraries listed below
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆93Updated last year
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆97Updated last week
- High-precision TE Annotator☆131Updated 3 weeks ago
- Yet another k-mer analyzer☆143Updated last year
- ☆141Updated 5 months ago
- Collection of tools for the analysis of CpG data☆95Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- tomato graph pangenome☆85Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆99Updated 7 months ago
- Application of pan-genome for population☆110Updated 11 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 4 months ago
- Make colorful identity heatmaps of genomic sequence☆121Updated last year
- Neural network classification of TE☆96Updated 4 months ago
- Pangenome-based genome inference☆147Updated 2 months ago
- Evaluating genome assemblies☆105Updated 3 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- Phased assembly variant caller☆126Updated 10 months ago
- A organelle de novo genome assembly toolkit☆69Updated 7 months ago
- Reference-free profiling of polyploid genomes☆126Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- A program for assessing the T2T genome continuity☆87Updated 2 weeks ago
- SRF: Satellite Repeat Finder☆97Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- ☆117Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Nanopore data assembler☆161Updated 3 years ago