eldariont / svim-asm
Structural Variant Identification Method using Genome Assemblies
☆112Updated 2 years ago
Alternatives and similar repositories for svim-asm:
Users that are interested in svim-asm are comparing it to the libraries listed below
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆87Updated 9 months ago
- Application of pan-genome for population☆104Updated 6 months ago
- High-precision TE Annotator☆117Updated this week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆95Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆135Updated 2 months ago
- Phased assembly variant caller☆112Updated 5 months ago
- tomato graph pangenome☆81Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆100Updated last month
- Comparison of multiple long read datasets☆127Updated last month
- Evaluating genome assemblies☆88Updated last month
- Nanopore data assembler☆151Updated 3 years ago
- Collection of tools for the analysis of CpG data☆81Updated 3 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆128Updated 6 months ago
- Yet another k-mer analyzer☆133Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆102Updated last month
- A genome completeness evaluation tool based on miniprot☆209Updated last week
- Identify and find telomeres, or telomeric repeats in a genome.☆125Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- source code for EVM☆109Updated 5 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆130Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆69Updated this week
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Long read aligner☆115Updated last year
- ☆145Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- Plotting tools for nanopore methylation data☆93Updated 11 months ago