Alternatives and similar repositories for wally:

Users that are interested in wally are comparing it to the libraries listed below

• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 3 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• epi2me-labs / modbam2bed
  ☆48Updated 4 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated this week
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆131Updated last month
• epi2me-labs / wf-basecalling
  ☆36Updated 3 weeks ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆94Updated 7 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆93Updated last week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆108Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆87Updated last month
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• twolinin / longphase
  ☆107Updated this week
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆53Updated this week
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆91Updated this week
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 2 months ago
• GeneDx / scramble
  ☆39Updated 8 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆95Updated last year
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆96Updated 8 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆107Updated last month
• mortazavilab / TranscriptClean
  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
  ☆68Updated 11 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• ryanlayer / stix
  Structural Variant Index
  ☆70Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆75Updated 10 months ago
• kjenike / panagram
  ☆61Updated last week
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆111Updated 3 weeks ago