tobiasrausch / wallyLinks
Wally: Visualization of aligned sequencing reads and contigs
☆118Updated 2 months ago
Alternatives and similar repositories for wally
Users that are interested in wally are comparing it to the libraries listed below
Sorting:
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Pangenome-based genome inference☆129Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆134Updated last month
- ☆48Updated 10 months ago
- Phased assembly variant caller☆119Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- Simple pileup-based variant caller☆90Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- Research release basecalling models and configurations☆113Updated last month
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- ☆112Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆104Updated 4 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆113Updated 2 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Somatic structural variant caller for long-read data☆69Updated 2 weeks ago
- ☆40Updated this week
- ☆78Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- A list of software for pangenomics☆117Updated last month