tobiasrausch / wally
Wally: Visualization of aligned sequencing reads and contigs
☆111Updated last month
Alternatives and similar repositories for wally:
Users that are interested in wally are comparing it to the libraries listed below
- Same species annotation lift over pipeline.☆96Updated last year
- Toolkit for calling structural variants using short or long reads☆100Updated 2 weeks ago
- ☆48Updated 5 months ago
- Phased assembly variant caller☆109Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- Simple pileup-based variant caller☆86Updated 10 months ago
- Pangenome-based genome inference☆121Updated this week
- A list of software for pangenomics☆98Updated this week
- ☆35Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆96Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- Structural Variant Index☆71Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- Dfam Transposable Element Tools Docker container.☆88Updated 2 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Somatic structural variant caller for long-read data☆57Updated this week
- Error correction of ONT transcript reads☆59Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Research release basecalling models and configurations☆107Updated 7 months ago
- ☆108Updated this week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated 3 months ago
- Collection of tools for the analysis of CpG data☆77Updated last week
- A tool for somatic structural variant calling using long reads☆114Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago