Alternatives and similar repositories for wally

Users that are interested in wally are comparing it to the libraries listed below

• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆110Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• twolinin / longphase
  ☆119Updated 2 weeks ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated 11 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆139Updated last week
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆106Updated 9 months ago
• epi2me-labs / modbam2bed
  ☆50Updated last month
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆114Updated last year
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆127Updated last week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆113Updated 4 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated 3 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆151Updated last month
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 2 months ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆57Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 5 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆137Updated last year
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 7 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆150Updated 3 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆104Updated 4 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated last week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 5 months ago
• daewoooo / SVbyEye
  ☆142Updated last week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆97Updated 4 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆57Updated 3 years ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆130Updated 2 months ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆125Updated last year