tobiasrausch / wallyView external linksLinks
Wally: Visualization of aligned sequencing reads and contigs
☆122Oct 9, 2025Updated 4 months ago
Alternatives and similar repositories for wally
Users that are interested in wally are comparing it to the libraries listed below
Sorting:
- A tool for somatic structural variant calling using long reads☆160Oct 20, 2025Updated 3 months ago
- Kmer Analysis of Pileups for Genotyping☆35Jan 30, 2026Updated 2 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 3 months ago
- Genome browser and variant annotation☆387Oct 30, 2025Updated 3 months ago
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated 3 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- ☆101Apr 22, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 7 months ago
- Jasmine: SV Merging Across Samples☆240Dec 20, 2024Updated last year
- Deep learning framework for SV calling and genotyping☆113Nov 8, 2023Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 7 months ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- ☆123Jan 21, 2026Updated 3 weeks ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated 10 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Nov 6, 2025Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Phased assembly variant caller☆132Dec 4, 2024Updated last year
- Annotation and Ranking of Structural Variation☆287Oct 7, 2025Updated 4 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆72Feb 19, 2019Updated 6 years ago
- Set of tools to manipulate and visualize modified base bam files☆59Aug 2, 2022Updated 3 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆234Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Jun 6, 2021Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated this week
- Long read aligner☆114May 26, 2023Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆94Jan 14, 2026Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- A tutorial on structural variant calling for short read sequencing data☆39Oct 24, 2024Updated last year
- ☆22Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆84Sep 17, 2025Updated 5 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 4 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- TIDDIT - structural variant calling☆78Dec 8, 2025Updated 2 months ago
- SRF: Satellite Repeat Finder☆101Jan 8, 2024Updated 2 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago