Alternatives and similar repositories for wally

Users that are interested in wally are comparing it to the libraries listed below

• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 3 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆106Updated 3 weeks ago
• twolinin / longphase
  ☆113Updated 2 months ago
• epi2me-labs / modbam2bed
  ☆48Updated 10 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆121Updated 7 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆130Updated 3 weeks ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆107Updated this week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆118Updated last week
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆98Updated 3 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• marbl / HG002
  A complete diploid human genome
  ☆121Updated 6 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆117Updated last week
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆111Updated 3 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆86Updated last week
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆95Updated 2 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆132Updated 11 months ago
• epi2me-labs / wf-basecalling
  ☆42Updated 3 weeks ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆56Updated 2 years ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆104Updated last week
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆78Updated last year
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆82Updated last week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆100Updated last month
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆38Updated last year