seryrzu / unialigner

Related projects: ⓘ

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆45Updated 5 months ago
• PacificBiosciences / primrose
  ☆45Updated this week
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated last month
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆47Updated last week
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 7 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆47Updated 2 years ago
• ablab / VerityMap
  ☆30Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆52Updated 2 years ago
• maickrau / ribotin
  ☆29Updated 3 weeks ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆30Updated 11 months ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆45Updated last year
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆47Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆57Updated last year
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆48Updated 3 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆16Updated last month
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆62Updated 11 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆44Updated 3 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆57Updated this week
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆28Updated 3 weeks ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆33Updated last week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆73Updated 2 weeks ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆49Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆79Updated 5 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆53Updated 2 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆41Updated 7 months ago
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆46Updated last year
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago