seryrzu / unialigner
☆64Updated 11 months ago
Alternatives and similar repositories for unialigner:
Users that are interested in unialigner are comparing it to the libraries listed below
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- ☆32Updated last week
- ☆34Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 5 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆76Updated last week
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- Banded Striped DNA Sequence Alignment☆45Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆76Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated this week
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆31Updated 2 weeks ago
- Efficient low-divergence mapping of long reads in minimizer space☆65Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Phased structural variant discovery in pangenomes☆32Updated 9 months ago
- Linear-time de novo Long Read Assembler☆39Updated last month
- ☆61Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- Error correction of ONT transcript reads☆59Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated last year
- TGS scaffolding☆46Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆52Updated 9 months ago
- Call select base modifications in PacBio HiFi reads☆2Updated last month
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆52Updated 2 months ago
- Simple pileup-based variant caller☆88Updated last month
- Code for phasing SVs with SNPs☆52Updated 4 years ago