lh3 / minipileup
Simple pileup-based variant caller
☆89Updated 2 weeks ago
Alternatives and similar repositories for minipileup:
Users that are interested in minipileup are comparing it to the libraries listed below
- A program for assessing the T2T genome continuity☆73Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- A local-haplotagging-based small and structural variant caller☆76Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- ☆43Updated 8 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- ☆46Updated 8 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆102Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆94Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- A list of software for pangenomics☆111Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- ☆61Updated last month
- ☆39Updated 3 weeks ago
- Dfam Transposable Element Tools Docker container.☆91Updated this week
- Same species annotation lift over pipeline.☆97Updated last year
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- SRF: Satellite Repeat Finder☆95Updated last year
- Phased assembly variant caller☆112Updated 5 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆68Updated last month
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- PacBio BAM toolkit☆43Updated 2 months ago