refresh-bio / agcLinks
Assembled Genomes Compressor
☆175Updated last year
Alternatives and similar repositories for agc
Users that are interested in agc are comparing it to the libraries listed below
Sorting:
- Aligns short reads using dynamic seed size with strobemers☆184Updated last week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated last month
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆106Updated 6 months ago
- BWT construction and search☆121Updated 2 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆208Updated 2 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated this week
- Yet another k-mer analyzer☆152Updated last week
- Read Until client library for Nanopore Sequencing☆107Updated last year
- A list of software for pangenomics☆162Updated this week
- Pairwise whole genome aligner☆220Updated last week
- Variant calling tool for long-read sequencing data☆117Updated 8 months ago
- ☆119Updated 3 weeks ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆86Updated 7 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆115Updated 3 weeks ago
- ☆118Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 3 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 5 months ago
- a tool for inferring species tree from sequencing reads☆155Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- Constructing a pangenome gene graph☆200Updated 3 months ago
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated last year
- ☆143Updated last month
- GUI for inspecting POD5 files☆34Updated 11 months ago