refresh-bio / agc

Related projects ⓘ

Alternatives and complementary repositories for agc

• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆149Updated 2 weeks ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆118Updated last week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆100Updated 5 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 4 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆105Updated last month
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆115Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆141Updated 2 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆97Updated last year
• wdecoster / chopper
  ☆150Updated last month
• marbl / ModDotPlot
  ☆119Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆111Updated this week
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆136Updated this week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆103Updated last month
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆83Updated 2 weeks ago
• ChaissonLab / LRA
  Long read aligner
  ☆112Updated last year
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆176Updated this week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆135Updated 2 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆110Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆174Updated 3 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆140Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆90Updated 5 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆108Updated last month
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆95Updated 3 weeks ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆127Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆76Updated last week
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆73Updated 3 weeks ago
• marbl / HG002
  A complete diploid human genome
  ☆96Updated 2 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆108Updated 2 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆63Updated 8 months ago