Alternatives and similar repositories for agc:

Users that are interested in agc are comparing it to the libraries listed below

• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆119Updated 3 weeks ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆167Updated this week
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆102Updated 2 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆74Updated last month
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆151Updated last week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆107Updated 3 weeks ago
• lh3 / ropebwt3
  BWT construction and search
  ☆112Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆146Updated 2 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆148Updated last month
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆128Updated this week
• twolinin / longphase
  ☆110Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 9 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated this week
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆186Updated this week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 6 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆110Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆114Updated this week
• marbl / ModDotPlot
  ☆143Updated this week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last week
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆100Updated last month
• kjenike / panagram
  ☆61Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆105Updated 9 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆65Updated 2 weeks ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 3 weeks ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆186Updated 2 weeks ago