Alternatives and similar repositories for agc

Users that are interested in agc are comparing it to the libraries listed below

• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆189Updated last month
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆134Updated 2 months ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆109Updated 7 months ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• lh3 / ropebwt3
  BWT construction and search
  ☆124Updated 3 weeks ago
• pangenome / seqwish
  alignment to variation graph inducer
  ☆156Updated last month
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆210Updated this week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆116Updated 10 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆158Updated 2 weeks ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆98Updated 8 months ago
• twolinin / longphase
  ☆121Updated 2 months ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆154Updated last week
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆224Updated last week
• GeneDx / pgr-tk
  ☆101Updated last year
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆118Updated this week
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆126Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 3 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆109Updated 11 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 4 months ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆156Updated 6 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated last month
• AntonBankevich / LJA
  ☆119Updated 3 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆118Updated 3 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆116Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆153Updated last month
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆92Updated this week
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆132Updated 3 years ago