refresh-bio / agcLinks
Assembled Genomes Compressor
☆168Updated 10 months ago
Alternatives and similar repositories for agc
Users that are interested in agc are comparing it to the libraries listed below
Sorting:
- Aligns short reads using dynamic seed size with strobemers☆177Updated last week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆129Updated last month
- BWT construction and search☆119Updated 2 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- Pairwise whole genome aligner☆189Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆147Updated this week
- Read Until client library for Nanopore Sequencing☆104Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- Variant calling tool for long-read sequencing data☆112Updated 6 months ago
- a tool for inferring species tree from sequencing reads☆152Updated last week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆83Updated 5 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Research release basecalling models and configurations☆114Updated 4 months ago
- Visualise and analyse nanopore (ONT) raw signals☆121Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- Yet another k-mer analyzer☆143Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 3 months ago
- A complete diploid human genome☆134Updated last week
- ☆117Updated last month
- Constructing a pangenome gene graph☆195Updated last month
- ☆117Updated 2 weeks ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆116Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago