brwnj / covviz
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
☆56Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for covviz
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week
- ☆39Updated 2 months ago
- Structural Variant Index☆70Updated this week
- Structural variant caller☆54Updated 2 years ago
- SV genotyping with long reads☆40Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- ☆29Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- ☆79Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆27Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated last month
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago