Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
☆59Feb 17, 2022Updated 4 years ago
Alternatives and similar repositories for covviz
Users that are interested in covviz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆120Oct 30, 2026Updated last week
- expressions on VCFs☆95Sep 25, 2026Updated last month
- vembrane filters, sorts, and transforms VCF records using python expressions☆71Updated this week
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 7 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 11 months ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 11 months ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 3 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- Structural variant merging tool☆58Aug 23, 2024Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆343Updated this week
- BigWig and BAM utilities☆105Sep 19, 2026Updated last month
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Modified or extracted from other programs☆15Dec 14, 2011Updated 14 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Aug 21, 2025Updated last year
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 3 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago