Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
☆58Feb 17, 2022Updated 4 years ago
Alternatives and similar repositories for covviz
Users that are interested in covviz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Oct 13, 2021Updated 4 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 6 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 6 months ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 5 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- use the noise☆15Apr 15, 2020Updated 6 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools to gather evidence for structural variation via breakpoint detection.☆21Mar 27, 2026Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 2 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 8 months ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- expressions on VCFs☆92Mar 17, 2026Updated 3 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆12Jun 11, 2026Updated last week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated 2 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- The complete sequence of a Chinese individual☆13Oct 8, 2024Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 4 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago