VACmap: a long-read aligner specifically designed for complex structural variation discovery
☆66May 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for VACmap
Users that are interested in VACmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆15May 14, 2026Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated 3 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Minimizer-based assembly scaffolding and mapping using long reads☆51Apr 1, 2026Updated 2 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- High-precision TE Annotator☆160Dec 4, 2025Updated 6 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 7 months ago
- A organelle de novo genome assembly toolkit☆77Feb 22, 2025Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆53Dec 9, 2025Updated 6 months ago
- ☆129May 4, 2026Updated last month
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆254Jun 5, 2026Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124May 4, 2026Updated last month
- ANI based satellite annotation☆26Mar 2, 2026Updated 3 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆45Dec 11, 2025Updated 6 months ago
- ☆39Feb 22, 2023Updated 3 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 3 months ago
- ☆51Sep 4, 2025Updated 9 months ago
- General purpose utility related to GAF files☆29May 20, 2026Updated 3 weeks ago
- ☆121Updated this week
- ☆13Nov 15, 2017Updated 8 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28May 20, 2026Updated 3 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆23Updated this week
- Assembled Genomes Compressor☆182May 6, 2026Updated last month
- Telomere compliment tools☆26Nov 17, 2025Updated 6 months ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month