Alternatives and similar repositories for VACmap

Users that are interested in VACmap are comparing it to the libraries listed below

• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• ablab / VerityMap
  ☆39Updated 2 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆52Updated last year
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 3 months ago
• vollgerlab / NucFreq
  ☆38Updated 4 months ago
• baozg / phased-assembly-check
  ☆32Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• i10labtitech / GINGER
  ☆29Updated last week
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆55Updated 8 months ago
• vollgerlab / SafFire
  ☆31Updated 9 months ago
• maickrau / ribotin
  ☆38Updated last month
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆43Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆54Updated 11 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆44Updated last year
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated last week
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• kjenike / panagram
  ☆68Updated last week
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆38Updated 4 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆32Updated 8 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆48Updated last year
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆37Updated 3 years ago