micahvista / VACmapLinks
VACmap: a long-read aligner specifically designed for complex structural variation discovery
☆36Updated last week
Alternatives and similar repositories for VACmap
Users that are interested in VACmap are comparing it to the libraries listed below
Sorting:
- SV calling for diploid assemblies☆29Updated last year
- ☆38Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- ☆36Updated 3 months ago
- Statistics and analysis for variation graphs☆45Updated 10 months ago
- ☆37Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆41Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆41Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- ☆31Updated 5 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Draw a dot plot from a paf alignment☆34Updated last month
- Linear-time de novo Long Read Assembler☆41Updated this week
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- ☆79Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 4 months ago
- ☆31Updated 9 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- VNTR annotation using motif selection☆38Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆63Updated last week
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆14Updated 8 months ago