micahvista / VACmapLinks
VACmap: a long-read aligner specifically designed for complex structural variation discovery
☆50Updated last week
Alternatives and similar repositories for VACmap
Users that are interested in VACmap are comparing it to the libraries listed below
Sorting:
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- ☆39Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆78Updated 5 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆91Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated 2 months ago
- ☆68Updated last week
- ☆32Updated last year
- ☆38Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- SV calling for diploid assemblies☆30Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- TGS scaffolding☆47Updated 4 years ago
- A tool for evaluating long-read de novo assembly results☆50Updated last year
- ☆38Updated 2 weeks ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆50Updated last month
- ☆31Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- Statistics and analysis for variation graphs☆47Updated last year
- Draw a dot plot from a paf alignment☆37Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆42Updated last year
- Show pangenome graphs in an easy way☆57Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago