kehrlab / PopIns2
Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
☆24Updated last year
Alternatives and similar repositories for PopIns2:
Users that are interested in PopIns2 are comparing it to the libraries listed below
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆16Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- The MafFilter genome alignment processor☆18Updated last month
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Benchmark structural variant calls against a reference set☆17Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Gene copy number prediction from k-mer frequencies☆13Updated 9 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 4 years ago
- ☆32Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago
- ☆17Updated last year
- ☆26Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year