kehrlab / PopIns2Links
Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
☆24Updated last year
Alternatives and similar repositories for PopIns2
Users that are interested in PopIns2 are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆32Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- ☆16Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- ☆15Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆17Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆15Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Convert HAL to VG☆22Updated 9 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago