ablab / TandemToolsLinks
Tool for assessing/improving assembly quality in extra-long tandem repeats
☆46Updated 4 years ago
Alternatives and similar repositories for TandemTools
Users that are interested in TandemTools are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆37Updated last year
- Statistics and analysis for variation graphs☆45Updated 7 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 3 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 8 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆31Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆52Updated 2 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- SV calling for diploid assemblies☆28Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆36Updated 2 weeks ago
- ☆77Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆41Updated 2 months ago
- ☆42Updated last year
- ☆30Updated 7 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆32Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Draw a dot plot from a paf alignment☆33Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆37Updated 11 months ago
- Multi-genome synteny block visualization tool☆42Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago