ablab / TandemToolsLinks
Tool for assessing/improving assembly quality in extra-long tandem repeats
☆46Updated 4 years ago
Alternatives and similar repositories for TandemTools
Users that are interested in TandemTools are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- ☆35Updated last year
- ☆30Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- TGS scaffolding☆46Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated this week
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- ☆35Updated 2 weeks ago
- SV calling for diploid assemblies☆27Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆76Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- ☆29Updated 5 months ago
- ☆42Updated last year
- ☆32Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆21Updated 3 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago