ablab / TandemTools
Tool for assessing/improving assembly quality in extra-long tandem repeats
☆45Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for TandemTools
- Tool for globally phasing diploid assembly graphs with orthogonal data☆38Updated 3 months ago
- assembly evaluation tool☆34Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆31Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- Identification of transposable element families from pangenome polymorphisms☆39Updated 3 months ago
- TGS scaffolding☆45Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- ☆31Updated 4 years ago
- ☆30Updated 2 weeks ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆28Updated 2 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 6 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆27Updated 2 weeks ago
- A genome assembly assessment pipeline.☆36Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆32Updated 3 years ago
- Statistics and analysis for variation graphs☆31Updated this week
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- ☆77Updated 4 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- Segmental Duplication Assembler (SDA).☆44Updated last year
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- ☆41Updated 6 months ago