Alternatives and similar repositories for TandemTools:

Users that are interested in TandemTools are comparing it to the libraries listed below

• ablab / VerityMap
  ☆34Updated 2 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last month
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• baozg / phased-assembly-check
  ☆29Updated last month
• mrvollger / NucFreq
  ☆35Updated 11 months ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆37Updated 2 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆44Updated 6 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated 9 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated last month
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆29Updated 2 months ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆26Updated 3 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆26Updated 7 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• maickrau / ribotin
  ☆32Updated this week
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆18Updated last year
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆46Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆33Updated 3 months ago