Maggi-Chen / DeBreak
Structural variant caller for real-time long-read sequencing data
☆56Updated 2 years ago
Alternatives and similar repositories for DeBreak:
Users that are interested in DeBreak are comparing it to the libraries listed below
- Simple pileup-based variant caller☆87Updated last month
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- ☆79Updated last month
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- ☆48Updated 9 months ago
- ☆77Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- A program for assessing the T2T genome continuity☆69Updated 3 weeks ago
- ☆39Updated 11 months ago
- ☆47Updated 7 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆61Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆80Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆101Updated 2 weeks ago
- python plotly Circos from VCF☆34Updated 9 months ago
- A local-haplotagging-based small and structural variant caller☆69Updated last week
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- VarIant SimulatOR for short, long and linked reads☆48Updated 5 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A list of software for pangenomics☆107Updated 3 weeks ago
- UCSC Nanopore☆43Updated 5 years ago