Structural variant caller for real-time long-read sequencing data
☆64Dec 1, 2022Updated 3 years ago
Alternatives and similar repositories for DeBreak
Users that are interested in DeBreak are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SV genotyper for long reads with a variation graph☆17Sep 28, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 3 weeks ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- Structural variant toolkit for VCFs☆428Oct 3, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast and accurate coordinate conversion between assemblies☆117Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆169Jul 15, 2026Updated 3 months ago
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated 2 weeks ago
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- ☆85Mar 3, 2025Updated last year
- Read-based phasing of genomic variants, also called haplotype assembly☆433Oct 9, 2026Updated 3 weeks ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated 3 weeks ago
- ☆17Jan 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- Yet another k-mer analyzer☆179Dec 30, 2025Updated 10 months ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆118Apr 9, 2025Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆120Updated this week
- ☆16Jan 10, 2022Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆396Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆52Jun 25, 2024Updated 2 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago
- A tool for somatic structural variant calling using long reads☆181Jun 8, 2026Updated 4 months ago
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆88Updated this week
- ☆33Nov 6, 2022Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week