PacificBiosciences / pbipaLinks
Improved Phased Assembler
☆28Updated 3 years ago
Alternatives and similar repositories for pbipa
Users that are interested in pbipa are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆30Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- SV calling for diploid assemblies☆27Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆32Updated 4 years ago
- ☆27Updated last year
- ☆25Updated 10 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- ☆35Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆17Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- genomic alignment similarity search tool☆18Updated last month
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 2 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Visualising discordant reads☆15Updated 9 years ago