Structural variant toolkit for VCFs
☆423Sep 8, 2026Updated last week
Alternatives and similar repositories for truvari
Users that are interested in truvari are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- Structural variation caller using third generation sequencing☆679Sep 10, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆293Aug 21, 2026Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolkit for calling structural variants using short or long reads☆117Aug 21, 2026Updated 3 weeks ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Phased assembly variant caller☆145Dec 4, 2024Updated last year
- Graph realignment tools for structural variants☆171Dec 8, 2022Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 3 years ago
- A tool for somatic structural variant calling using long reads☆178Jun 8, 2026Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆430Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- A complete diploid human genome☆159Aug 10, 2026Updated last month
- Pangenome-based genome inference☆180Updated this week
- Structural Variant Identification Method using Long Reads☆186Jun 29, 2021Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated 2 months ago
- Haplotype VCF comparison tools☆473Dec 7, 2023Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆535Updated this week
- A structural variation pipeline for short-read sequencing☆207Updated this week
- ☆102Apr 22, 2024Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- ☆131Aug 24, 2026Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆218Jun 23, 2026Updated 2 months ago
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- Deep learning framework for SV calling and genotyping☆116Nov 8, 2023Updated 2 years ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- ☆85Mar 3, 2025Updated last year