Alternatives and similar repositories for truvari

Users that are interested in truvari are comparing it to the libraries listed below

• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆407Updated 2 years ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆306Updated last year
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆321Updated 3 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆285Updated 11 months ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆281Updated 3 months ago
• tjiangHIT / cuteSV
  Long read based human genomic structural variation detection with cuteSV
  ☆277Updated 3 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆557Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆288Updated last month
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆523Updated 2 years ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆276Updated 2 years ago
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆331Updated 7 months ago
• igvteam / igv-reports
  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
  ☆398Updated 2 months ago
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆401Updated 2 weeks ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆218Updated 2 months ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆280Updated 8 months ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆500Updated 2 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆310Updated last month
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆374Updated 3 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆301Updated 3 months ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆245Updated last week
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆378Updated last week
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆219Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆236Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆443Updated 8 months ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆262Updated last year
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆262Updated 2 years ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆379Updated last year
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆630Updated last month
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆241Updated this week