alshai / levioSAMLinks
Lift-over alignments from variant-aware references
☆34Updated 2 years ago
Alternatives and similar repositories for levioSAM
Users that are interested in levioSAM are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Convert HAL to VG☆22Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆28Updated 6 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- ☆17Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- General purpose utility related to GAF files☆29Updated last month
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆11Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆35Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Long-read aligner to pangenome graphs☆27Updated last year
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago