alshai / levioSAM
Lift-over alignments from variant-aware references
☆34Updated last year
Related projects: ⓘ
- run-length BWT tools for genomic sequences☆18Updated 2 years ago
- ☆28Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆35Updated this week
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆13Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆31Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆19Updated 6 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated last year
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- Convert HAL to VG☆21Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- ☆16Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆28Updated 3 years ago
- ☆13Updated last year
- Kmer based genotyper for short reads.☆23Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago
- ☆16Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆22Updated 6 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago