alshai / levioSAMLinks
Lift-over alignments from variant-aware references
☆35Updated 2 years ago
Alternatives and similar repositories for levioSAM
Users that are interested in levioSAM are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Convert HAL to VG☆22Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- ☆16Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- recompute GFA link overlaps☆26Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆34Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- A software for discovery, genotyping and characterization of structural variants☆22Updated 11 months ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- Differential k-mer analysis☆36Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- ☆21Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 3 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆28Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago