twolinin / longphaseLinks
☆119Updated 3 weeks ago
Alternatives and similar repositories for longphase
Users that are interested in longphase are comparing it to the libraries listed below
Sorting:
- Phased assembly variant caller☆129Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- Pangenome-based genome inference☆149Updated last week
- Collection of tools for the analysis of CpG data☆99Updated 5 months ago
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- Yet another k-mer analyzer☆152Updated last week
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- A list of software for pangenomics☆162Updated last week
- Simple pileup-based variant caller☆94Updated 7 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆115Updated 3 weeks ago
- Copy number caller for long read data including SNV utilization☆68Updated 8 months ago
- ☆52Updated 2 months ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 3 months ago
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- Long read aligner☆115Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆155Updated last month
- A local-haplotagging-based small and structural variant caller☆89Updated 2 weeks ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- ☆143Updated last month
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- Structural variant caller for real-time long-read sequencing data☆60Updated 3 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆86Updated 7 months ago