Alternatives and similar repositories for longphase

Users that are interested in longphase are comparing it to the libraries listed below

• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated 11 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆111Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆107Updated 9 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆128Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated last week
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆104Updated 4 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆142Updated 2 weeks ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆114Updated this week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• epi2me-labs / modbam2bed
  ☆50Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆128Updated 3 years ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 7 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 2 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆151Updated last month
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆58Updated 2 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆97Updated 4 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated this week
• mobinasri / flagger
  Evaluating genome assemblies
  ☆109Updated 2 months ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆86Updated 11 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆116Updated 5 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆113Updated 4 months ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆115Updated 3 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated 2 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆89Updated last month
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆96Updated last year
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆150Updated last month