☆129Jun 25, 2026Updated this week
Alternatives and similar repositories for longphase
Users that are interested in longphase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆85Mar 3, 2025Updated last year
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 9 months ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Jasmine: SV Merging Across Samples☆255Dec 20, 2024Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆80Jun 18, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆376Updated this week
- Long read based human genomic structural variation detection with cuteSV☆290Mar 26, 2026Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆418Dec 31, 2025Updated 6 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Somatic structural variant caller for long-read data☆92Jun 18, 2026Updated last week
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Structural variant toolkit for VCFs☆417May 22, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- Structural variation caller using third generation sequencing☆666Jun 24, 2026Updated last week
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆173Jun 8, 2026Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆119Jun 1, 2026Updated last month
- ☆16Apr 2, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated last week
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆67May 26, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tandem repeat genotyping and visualization from PacBio HiFi data☆139Jun 10, 2026Updated 3 weeks ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated 2 months ago
- ☆30Mar 1, 2026Updated 4 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 5 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆116Apr 9, 2025Updated last year
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆105Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Evaluating genome assemblies☆122Mar 3, 2026Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated last month
- ☆42May 19, 2025Updated last year
- Toolkit for calling structural variants using short or long reads☆115Jun 15, 2026Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago