Alternatives and similar repositories for longphase:

Users that are interested in longphase are comparing it to the libraries listed below

• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated last month
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 4 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated 2 weeks ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last week
• EichlerLab / pav
  Phased assembly variant caller
  ☆109Updated 2 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆114Updated 3 weeks ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆135Updated 3 weeks ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 7 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆126Updated 10 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆96Updated 3 weeks ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆57Updated this week
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆79Updated 2 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆202Updated last month
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆91Updated last week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆77Updated last week
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated 10 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆179Updated 7 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• epi2me-labs / wf-basecalling
  ☆35Updated 2 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆99Updated 3 years ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆119Updated this week
• epi2me-labs / modbam2bed
  ☆48Updated 5 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆119Updated 4 months ago
• marbl / HG002
  A complete diploid human genome
  ☆112Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆132Updated 3 months ago