PopicLab / cue
Deep learning framework for SV calling and genotyping
☆103Updated last year
Alternatives and similar repositories for cue:
Users that are interested in cue are comparing it to the libraries listed below
- Detecting genome structural variants with deep learning in single molecule sequencing☆102Updated 3 weeks ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆78Updated last month
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆77Updated 2 years ago
- Research release basecalling models and configurations☆104Updated 7 months ago
- Variant calling tool for long-read sequencing data☆102Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆108Updated this week
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated this week
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- Detection of m6A from direct RNA-Seq data☆113Updated 4 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- A tool for profiling long STRs from short reads☆93Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- ☆81Updated 2 weeks ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆79Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated this week
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆56Updated last month
- phasing and Allele Specific Expression from RNA-seq☆110Updated 6 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆113Updated 6 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 6 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 2 months ago
- Pangenome-based genome inference☆121Updated this week
- ☆109Updated last month
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- WisecondorX — An evolved WISECONDOR☆94Updated 4 months ago
- Jasmine: SV Merging Across Samples☆190Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- A complete diploid human genome☆106Updated this week