Alternatives and similar repositories for cue

Users that are interested in cue are comparing it to the libraries listed below

• xjtu-omics / SVision
  Detecting genome structural variants with deep learning in single molecule sequencing
  ☆112Updated 4 months ago
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆81Updated 2 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 4 months ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆66Updated 4 months ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆115Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆141Updated this week
• human-pangenomics / hpp_pangenome_resources
  ☆117Updated last year
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆115Updated last month
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆114Updated 4 months ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆84Updated this week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆122Updated 2 weeks ago
• mortazavilab / TranscriptClean
  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
  ☆68Updated last year
• marbl / HG002
  A complete diploid human genome
  ☆124Updated last week
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆87Updated last month
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆82Updated 2 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆85Updated last month
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆98Updated 4 years ago
• epi2me-labs / wf-transcriptomes
  ☆100Updated last week
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆116Updated last year
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆132Updated last month
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆93Updated 4 months ago
• HKU-BAL / Clair
  Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
  ☆104Updated 2 years ago
• lh3 / hickit
  TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
  ☆110Updated 4 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆93Updated 2 months ago
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆60Updated 4 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆123Updated 3 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 2 months ago
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆129Updated 2 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆110Updated last year
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago