PopicLab / cue
Deep learning framework for SV calling and genotyping
☆102Updated last year
Related projects ⓘ
Alternatives and complementary repositories for cue
- ClairS - a deep-learning method for long-read somatic small variant calling☆75Updated last week
- Detecting genome structural variants with deep learning in single molecule sequencing☆101Updated 7 months ago
- Toolkit for calling structural variants using short or long reads☆98Updated this week
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆130Updated 3 weeks ago
- ☆105Updated this week
- Variant calling tool for long-read sequencing data☆101Updated this week
- Fast and accurate coordinate conversion between assemblies☆110Updated last month
- Pangenome-based genome inference☆114Updated this week
- Research release basecalling models and configurations☆103Updated 5 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆80Updated 2 years ago
- Detection of m6A from direct RNA-Seq data☆108Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆105Updated 2 weeks ago
- ☆76Updated last week
- A tool for profiling long STRs from short reads☆88Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 weeks ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated 4 months ago
- Jasmine: SV Merging Across Samples☆181Updated 2 years ago
- Tools to work with GWAS-VCF summary statistics files☆105Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆75Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- phasing and Allele Specific Expression from RNA-seq☆111Updated 4 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆128Updated this week
- cDNA read preprocessing☆61Updated 3 months ago
- ☆100Updated last year
- Tools for plotting methylation data in various ways☆131Updated last month