kcleal / dysgu
Toolkit for calling structural variants using short or long reads
☆100Updated this week
Alternatives and similar repositories for dysgu:
Users that are interested in dysgu are comparing it to the libraries listed below
- Tools for the analysis of structural variation in genomes☆78Updated 11 months ago
- Phased assembly variant caller☆110Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆32Updated 2 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆46Updated 2 years ago
- Somatic structural variant caller for long-read data☆60Updated last week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- ☆48Updated 6 months ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated last week
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Structural Variant Index☆72Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆49Updated 4 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ☆39Updated 10 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 9 months ago
- Copy number caller for long read data including SNV utilization☆58Updated 5 months ago
- ☆109Updated 2 weeks ago
- Simple pileup-based variant caller☆88Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 5 months ago
- Error correction of ONT transcript reads☆59Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆37Updated last week
- ☆27Updated last month
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- A program for assessing the T2T genome continuity☆69Updated 2 weeks ago
- ☆79Updated 2 weeks ago