Toolkit for calling structural variants using short or long reads
☆115Mar 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for dysgu
Users that are interested in dysgu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆401Updated this week
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Genome browser and variant annotation☆392Oct 30, 2025Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 6 months ago
- Long read based human genomic structural variation detection with cuteSV☆281Sep 30, 2025Updated 5 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- using all the bits for echt rapid variant annotation and filtering☆154Feb 18, 2026Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 4 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Detection and genotyping of structural variants☆20Oct 17, 2025Updated 5 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Annotation and Ranking of Structural Variation☆288Updated this week
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Nov 19, 2025Updated 4 months ago
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- Phased assembly variant caller☆136Dec 4, 2024Updated last year
- Application of pan-genome for population☆116Oct 26, 2025Updated 4 months ago
- A tool for somatic structural variant calling using long reads☆166Mar 12, 2026Updated last week
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- A local-haplotagging-based small and structural variant caller☆96Mar 11, 2026Updated last week
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆123Oct 9, 2025Updated 5 months ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last month
- SV detection tool for nanopore sequence reads☆97Mar 15, 2026Updated last week
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- expressions on VCFs☆91Updated this week
- Tools to gather evidence for structural variation via breakpoint detection.