kcleal / dysgu
Toolkit for calling structural variants using short or long reads
☆100Updated 2 weeks ago
Alternatives and similar repositories for dysgu:
Users that are interested in dysgu are comparing it to the libraries listed below
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- Phased assembly variant caller☆109Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated this week
- Somatic structural variant caller for long-read data☆57Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ☆48Updated 5 months ago
- Structural Variant Index☆71Updated 2 months ago
- ☆108Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Error correction of ONT transcript reads☆59Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆91Updated last week
- ☆39Updated 9 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- WDL workflows for variant calling and assembly using ONT☆32Updated 2 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- PGR-TK: Pangenome Research Tool Kit☆97Updated 9 months ago
- ☆27Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆35Updated 2 weeks ago
- SV caller for nanopore data☆91Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago