Alternatives and similar repositories for dysgu:

Users that are interested in dysgu are comparing it to the libraries listed below

• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 3 months ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆53Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆110Updated 3 weeks ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆107Updated last month
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• twolinin / longphase
  ☆107Updated this week
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆46Updated 4 years ago
• GeneDx / scramble
  ☆39Updated 8 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated 9 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆49Updated 2 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆97Updated 3 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆45Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 2 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆108Updated this week
• ryanlayer / stix
  Structural Variant Index
  ☆70Updated last month
• epi2me-labs / modbam2bed
  ☆48Updated 4 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last month
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆44Updated 2 years ago
• MeHelmy / princess
  ☆79Updated 8 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆89Updated last month
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆72Updated 3 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆96Updated 8 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆91Updated this week
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 7 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week