A Hi-C scaffolding method
☆22Dec 22, 2021Updated 4 years ago
Alternatives and similar repositories for pin_hic
Users that are interested in pin_hic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Telomere compliment tools☆28Nov 17, 2025Updated 4 months ago
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- ☆28Oct 20, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 9 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Mar 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Align subreads to ccs reads☆14Jun 11, 2025Updated 10 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 9 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Yet another Hi-C scaffolding tool☆176Nov 4, 2024Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- ☆16Dec 25, 2024Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Genome annotation pre-publication results☆26Mar 26, 2026Updated 3 weeks ago
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- ☆37Feb 22, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆107Jul 23, 2024Updated last year
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆84May 22, 2024Updated last year