dfguan / pin_hic

Related projects ⓘ

Alternatives and complementary repositories for pin_hic

• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆23Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated 9 months ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 3 weeks ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆23Updated 7 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆19Updated 4 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated last week
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated 11 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• at-cg / RAFT
  ☆18Updated 2 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆23Updated 4 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆15Updated 6 months ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆13Updated 3 weeks ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆19Updated 4 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated last month
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆21Updated 3 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆14Updated 10 months ago
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆12Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 4 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆23Updated 10 months ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated last month
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 2 months ago