dfguan / pin_hicLinks
A Hi-C scaffolding method
☆22Updated 3 years ago
Alternatives and similar repositories for pin_hic
Users that are interested in pin_hic are comparing it to the libraries listed below
Sorting:
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆16Updated 8 months ago
- ☆20Updated last week
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- Domain based annotation of transposable elements☆20Updated 3 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago
- ☆26Updated last year
- Identification of conserved non-coding sequences in plants☆21Updated 4 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆27Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- TD2☆15Updated 2 months ago
- Construct and Analyze the North American Vitis pangenome☆24Updated last week
- SV calling for diploid assemblies☆28Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- ☆31Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- The MafFilter genome alignment processor☆19Updated 3 months ago