Alternatives and similar repositories for vcfdist

Users that are interested in vcfdist are comparing it to the libraries listed below

• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆52Updated 2 weeks ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆104Updated 2 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆99Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated last month
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆73Updated 2 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated 3 weeks ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆34Updated 2 weeks ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆50Updated last month
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 2 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• epi2me-labs / wf-alignment
  ☆28Updated 3 weeks ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆107Updated last week
• ryanlayer / stix
  Structural Variant Index
  ☆74Updated 5 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆90Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆65Updated 2 months ago
• epi2me-labs / modbam2bed
  ☆48Updated 9 months ago
• MeHelmy / princess
  ☆80Updated 3 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated last month
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆57Updated 3 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 4 months ago
• twolinin / longphase
  ☆112Updated last month
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆110Updated 2 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆116Updated 6 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 2 months ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆32Updated 3 weeks ago