TimD1 / vcfdist
vcfdist: Accurately benchmarking phased variant calls
☆79Updated last week
Alternatives and similar repositories for vcfdist:
Users that are interested in vcfdist are comparing it to the libraries listed below
- Toolkit for calling structural variants using short or long reads☆100Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- Phased assembly variant caller☆107Updated last month
- PGR-TK: Pangenome Research Tool Kit☆96Updated 9 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆91Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 4 months ago
- Simple pileup-based variant caller☆86Updated 9 months ago
- ☆107Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆95Updated last week
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆113Updated last week
- ☆48Updated 5 months ago
- Show pangenome graphs in an easy way☆54Updated 2 years ago
- A list of software for pangenomics☆96Updated 3 weeks ago
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- Structural Variant Index☆71Updated last month
- WDL workflows for variant calling and assembly using ONT☆30Updated this week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last week
- ☆61Updated 3 weeks ago
- ☆26Updated 2 months ago
- Somatic structural variant caller for long-read data☆55Updated this week
- Tandem repeat expansion detection or genotyping from long-read alignments☆89Updated 2 months ago
- Pangenome-based genome inference☆121Updated this week
- ☆79Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago