TimD1 / vcfdistLinks
vcfdist: Accurately benchmarking phased variant calls
☆85Updated 3 months ago
Alternatives and similar repositories for vcfdist
Users that are interested in vcfdist are comparing it to the libraries listed below
Sorting:
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 9 months ago
- Copy number caller for long read data including SNV utilization☆68Updated 8 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆90Updated last week
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- ☆101Updated last year
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- ☆52Updated 3 months ago
- ☆83Updated 9 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- HiFi-based caller for highly similar paralogous genes☆58Updated last month
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- ☆121Updated last month
- ☆32Updated last month
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆64Updated last week
- Structural Variant Index☆75Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 9 months ago