isovic / graphmapLinks
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
☆182Updated 6 years ago
Alternatives and similar repositories for graphmap
Users that are interested in graphmap are comparing it to the libraries listed below
Sorting:
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆237Updated last year
- a toolkit for working with Oxford nanopore data☆246Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆288Updated last year
- Find all significant local alignments between reads☆141Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- de novo sequence assembler using string graphs☆241Updated 6 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 7 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆282Updated 10 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆298Updated 3 weeks ago
- Structural variation and indel detection by local assembly☆247Updated this week
- Graphical Fragment Assembly (GFA) Format Specification☆213Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Jasmine: SV Merging Across Samples☆223Updated 8 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆156Updated 6 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago