schatzlab / genomescope
Fast genome analysis from unassembled short reads
☆279Updated 10 months ago
Alternatives and similar repositories for genomescope:
Users that are interested in genomescope are comparing it to the libraries listed below
- haplotypic duplication identification tool☆221Updated last year
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Synteny and Rearrangement Identifier☆361Updated 2 months ago
- VGP repository for the genome assembly working group☆190Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆213Updated last year
- An overview of all nanopack tools☆233Updated last year
- An updated pipeline for pangenome investigation☆282Updated this week
- A tool to circularize genome assemblies☆236Updated 10 months ago
- Filtering and trimming of long read sequencing data☆198Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆258Updated this week
- quality filtering tool for long reads☆317Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆274Updated 4 months ago
- k-mer based assembly evaluation☆302Updated 7 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆182Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year
- De-Novo Repeat Discovery Tool☆200Updated last month
- Genome Assembly and Annotation Service code☆207Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆202Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 9 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆196Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆242Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆217Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 6 months ago
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆254Updated last month
- Bacterial ribosomal RNA predictor☆234Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last month