schatzlab / genomescope
Fast genome analysis from unassembled short reads
☆259Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for genomescope
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆271Updated last month
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆241Updated 2 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆200Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆231Updated 2 weeks ago
- An overview of all nanopack tools☆214Updated last year
- Fast and accurately polish the genome generated by long reads.☆213Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆148Updated 11 months ago
- PASA software☆174Updated 11 months ago
- Filtering and trimming of long read sequencing data☆189Updated last year
- VGP repository for the genome assembly working group☆188Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 6 months ago
- De-Novo Repeat Discovery Tool☆195Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆226Updated last year
- haplotypic duplication identification tool☆209Updated 10 months ago
- A tool to circularize genome assemblies☆233Updated 7 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆178Updated 9 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆176Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆192Updated 3 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆192Updated 3 months ago
- Genome Assembly and Annotation Service code☆202Updated 11 months ago
- k-mer based assembly evaluation☆285Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆308Updated 5 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆191Updated 10 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆125Updated 2 years ago