ruanjue / smartdenovoLinks
Ultra-fast de novo assembler using long noisy reads
☆135Updated 4 years ago
Alternatives and similar repositories for smartdenovo
Users that are interested in smartdenovo are comparing it to the libraries listed below
Sorting:
- Nanopore data assembler☆157Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- ☆200Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- Version 5 of the CAFE phylogenetics software☆134Updated 5 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated this week
- Yet another Hi-C scaffolding tool☆154Updated 8 months ago
- Structural Variant Identification Method using Long Reads☆172Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last week
- Any Way to Show Multi genomic Synteny☆197Updated last week
- Get assembly statistics from FASTA and FASTQ files☆121Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆206Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- A genome completeness evaluation tool based on miniprot☆215Updated 2 months ago
- Long-read mock community experiments☆105Updated 3 years ago
- ☆151Updated 2 months ago
- Foreign Contamination Screening caller scripts and documentation☆131Updated 3 months ago
- Reference-free profiling of polyploid genomes☆119Updated last month
- ☆212Updated 5 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆106Updated last year