Nanopore data assembler
☆170Mar 27, 2022Updated 4 years ago
Alternatives and similar repositories for NECAT
Users that are interested in NECAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆71Apr 28, 2020Updated 6 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Ultra-fast de novo assembler using long noisy reads☆137Feb 24, 2021Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- ☆78Jun 12, 2020Updated 6 years ago
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- A single molecule sequence assembler for genomes large and small.☆703Jun 18, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 7 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆571Feb 14, 2024Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆945Apr 3, 2026Updated 3 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Filtering and trimming of long read sequencing data☆218Jan 16, 2023Updated 3 years ago
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago
- ☆278Jun 26, 2025Updated last year
- quality filtering tool for long reads☆406Sep 17, 2025Updated 10 months ago
- ☆78Dec 4, 2019Updated 6 years ago
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- Long read based human genomic structural variation detection with cuteSV