xiaochuanle / NECATLinks
Nanopore data assembler
☆157Updated 3 years ago
Alternatives and similar repositories for NECAT
Users that are interested in NECAT are comparing it to the libraries listed below
Sorting:
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- haplotypic duplication identification tool☆249Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- ☆200Updated 2 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆173Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆215Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- Structural Variant Identification Method using Genome Assemblies☆121Updated 2 years ago
- Yet another Hi-C scaffolding tool☆154Updated 8 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆214Updated 10 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆138Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- Version 5 of the CAFE phylogenetics software☆134Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 5 months ago
- Foreign Contamination Screening caller scripts and documentation☆131Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆197Updated last week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last week
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated this week
- Yet another k-mer analyzer☆140Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆132Updated last week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year