xiaochuanle / NECATLinks
Nanopore data assembler
☆161Updated 3 years ago
Alternatives and similar repositories for NECAT
Users that are interested in NECAT are comparing it to the libraries listed below
Sorting:
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- ☆216Updated last month
- A genome completeness evaluation tool based on miniprot☆227Updated last month
- Foreign Contamination Screening caller scripts and documentation☆147Updated 7 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated 11 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 2 weeks ago
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Yet another Hi-C scaffolding tool☆163Updated 11 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- haplotypic duplication identification tool☆260Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆219Updated last year
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- ☆218Updated 9 months ago
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆206Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- Yet another k-mer analyzer☆149Updated 3 weeks ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Research release basecalling models and configurations☆115Updated 5 months ago