PacificBiosciences / FALCONLinks
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆206Updated 3 years ago
Alternatives and similar repositories for FALCON
Users that are interested in FALCON are comparing it to the libraries listed below
Sorting:
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆301Updated last year
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆143Updated 8 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆233Updated 3 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆221Updated 2 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆97Updated 6 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆321Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Next generation sequencing reads de novo assembler.☆232Updated last year
- 3D de novo assembly (3D DNA) pipeline☆212Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆282Updated 2 weeks ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆279Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- VarDict☆200Updated last year
- An overview of all nanopack tools☆252Updated 2 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- ☆209Updated 4 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- Classifier for metagenomic sequences☆260Updated 7 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- Reads simulator☆276Updated 3 years ago
- a toolkit for working with Oxford nanopore data☆243Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆388Updated last year
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago