PacificBiosciences / FALCONLinks
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆206Updated 3 years ago
Alternatives and similar repositories for FALCON
Users that are interested in FALCON are comparing it to the libraries listed below
Sorting:
- Next generation sequencing reads de novo assembler.☆233Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆303Updated last year
- Fast and accurate de novo assembler for long reads☆388Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆223Updated last week
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆109Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆232Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆284Updated last month
- Read trimming tool for Illumina NGS data.☆138Updated 10 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- PASA software☆188Updated 4 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- 3D de novo assembly (3D DNA) pipeline☆212Updated last year
- Jasmine: SV Merging Across Samples☆216Updated 6 months ago
- VarDict☆198Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆249Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆200Updated 4 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 5 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆205Updated 3 months ago
- Find all significant local alignments between reads☆141Updated 11 months ago