PacificBiosciences / FALCONLinks
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆205Updated 3 years ago
Alternatives and similar repositories for FALCON
Users that are interested in FALCON are comparing it to the libraries listed below
Sorting:
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆305Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆344Updated 4 months ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆236Updated 4 years ago
- Reads simulator☆282Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆293Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆218Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆176Updated last week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆232Updated 5 months ago
- A minimap2 frontend for PacBio native data formats☆205Updated 2 weeks ago
- ☆131Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 9 months ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Updated 5 years ago
- VarDict☆201Updated last year
- Long read / genome alignment software☆307Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆316Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago