PacificBiosciences / FALCON
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆204Updated 2 years ago
Alternatives and similar repositories for FALCON:
Users that are interested in FALCON are comparing it to the libraries listed below
- Ultra-fast de novo assembler using long noisy reads☆131Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆295Updated 10 months ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆227Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆213Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆276Updated 8 months ago
- A minimap2 frontend for PacBio native data formats☆178Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆206Updated last month
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆108Updated 4 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆142Updated 8 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 8 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆259Updated 7 months ago
- Structural variation and indel detection by local assembly☆240Updated 2 months ago
- Next generation sequencing reads de novo assembler.☆225Updated last year
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆165Updated 5 years ago
- VarDict☆192Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆255Updated 3 weeks ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- Find all significant local alignments between reads☆140Updated 6 months ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- An overview of all nanopack tools☆230Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 3 months ago
- Reads simulator☆268Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated last month