PacificBiosciences / FALCON
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆205Updated 2 years ago
Related projects: ⓘ
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆287Updated 6 months ago
- Ultra-fast de novo assembler using long noisy reads☆129Updated 3 years ago
- Next generation sequencing reads de novo assembler.☆219Updated 8 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆233Updated last month
- VarDict☆187Updated 8 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆208Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆203Updated 9 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆268Updated 4 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆152Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆249Updated 2 months ago
- A flexible framework for rapid genome analysis and interpretation☆312Updated last year
- Fast and frugal disk based k-mer counter☆266Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆175Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆189Updated 8 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆303Updated 9 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆140Updated 7 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆179Updated 5 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆147Updated last year
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆163Updated 4 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆221Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆340Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆358Updated 4 months ago
- A minimap2 frontend for PacBio native data formats☆170Updated 3 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆195Updated 2 weeks ago
- Reads simulator☆262Updated 3 years ago
- Classifier for metagenomic sequences☆246Updated 2 months ago
- Structural variation and indel detection by local assembly☆230Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆123Updated 2 years ago
- DRAGEN open-source mapper☆153Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆183Updated last month