Peregrine: Fast Genome Assembler Using SHIMMER Index
☆102Feb 6, 2022Updated 4 years ago
Alternatives and similar repositories for Peregrine
Users that are interested in Peregrine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆291Dec 29, 2025Updated 10 months ago
- ☆78Jun 12, 2020Updated 6 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- ☆124Updated this week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆84Jul 24, 2026Updated 3 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆53May 16, 2022Updated 4 years ago
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- ☆46Jun 21, 2020Updated 6 years ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- Yet another k-mer analyzer☆179Dec 30, 2025Updated 10 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- ☆63Sep 15, 2025Updated last year
- Sequence-to-graph mapper and graph generator☆493Aug 11, 2025Updated last year
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆65Oct 15, 2020Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 8 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Global alignment and alignment extension☆144Jun 27, 2023Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- A single molecule sequence assembler for genomes large and small.☆707Updated this week