Alternatives and similar repositories for Peregrine

Users that are interested in Peregrine are comparing it to the libraries listed below

• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated 2 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆104Updated 11 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆122Updated 2 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆144Updated last year
• AntonBankevich / LJA
  ☆117Updated this week
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆110Updated 2 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆102Updated 7 months ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated 10 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆70Updated 2 months ago
• adigenova / wengan
  An accurate and ultra-fast hybrid genome assembler
  ☆85Updated last year
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆79Updated 5 years ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆85Updated 9 months ago
• shilpagarg / DipAsm
  ☆77Updated 5 years ago
• kjenike / panagram
  ☆64Updated last month
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆94Updated last month
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 3 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆72Updated 4 years ago
• almiheenko / AGB
  Interactive visualization of assembly graphs
  ☆83Updated 3 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆13Updated 7 months ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆60Updated 6 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆80Updated 2 weeks ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆150Updated last month
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated last year