cschin / PeregrineLinks
Peregrine: Fast Genome Assembler Using SHIMMER Index
☆102Updated 3 years ago
Alternatives and similar repositories for Peregrine
Users that are interested in Peregrine are comparing it to the libraries listed below
Sorting:
- ☆119Updated 3 months ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated last week
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆110Updated last year
- ☆68Updated last week
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Yet another k-mer analyzer☆157Updated 3 weeks ago
- A local-haplotagging-based small and structural variant caller☆93Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆118Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆132Updated 3 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆102Updated 2 months ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- ☆78Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- A program for assessing the T2T genome continuity☆92Updated last month
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆35Updated 3 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆98Updated 9 months ago
- Assemblies from HPP Year 1 production☆80Updated 2 years ago