Peregrine: Fast Genome Assembler Using SHIMMER Index
☆102Feb 6, 2022Updated 4 years ago
Alternatives and similar repositories for Peregrine
Users that are interested in Peregrine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- ☆289Dec 29, 2025Updated 6 months ago
- ☆78Jun 12, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆123Jul 17, 2026Updated last week
- A tool for Racon polishing of miniasm assemblies☆81Updated this week
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆53May 16, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆115Jun 6, 2021Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- ☆46Apr 18, 2026Updated 3 months ago
- alignment to variation graph inducer☆163Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆65Oct 15, 2020Updated 5 years ago
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- ☆46Jun 21, 2020Updated 6 years ago
- ☆63Sep 15, 2025Updated 10 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆70Dec 2, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- A fast K-mer counter for high-fidelity shotgun datasets☆146Jan 19, 2026Updated 6 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 4 months ago
- Yet Another Chimeric Read Detector☆87Nov 7, 2024Updated last year
- A single molecule sequence assembler for genomes large and small.☆703Jun 18, 2026Updated last month