Peregrine: Fast Genome Assembler Using SHIMMER Index
☆102Feb 6, 2022Updated 4 years ago
Alternatives and similar repositories for Peregrine
Users that are interested in Peregrine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- ☆287Dec 29, 2025Updated 4 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 2 months ago
- ☆119Oct 10, 2025Updated 6 months ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Long read / genome alignment software☆316Dec 16, 2025Updated 4 months ago
- Yet another k-mer analyzer☆169Dec 30, 2025Updated 4 months ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆53May 16, 2022Updated 3 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Sequence-to-graph mapper and graph generator☆477Aug 11, 2025Updated 8 months ago
- ☆43Apr 18, 2026Updated 2 weeks ago
- alignment to variation graph inducer☆159Apr 11, 2026Updated 3 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Oct 15, 2020Updated 5 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- ☆62Sep 15, 2025Updated 7 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- ☆46Jun 21, 2020Updated 5 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A fast K-mer counter for high-fidelity shotgun datasets☆143Jan 19, 2026Updated 3 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated last month
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Yet Another Chimeric Read Detector☆86Nov 7, 2024Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago