lh3 / unimap
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
β88Updated 3 years ago
Alternatives and similar repositories for unimap:
Users that are interested in unimap are comparing it to the libraries listed below
- Hybrid error correction of long reads using colored de Bruijn graphsβ100Updated 6 months ago
- πGenome assembly scaffolder using minimizer graphsβ83Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigsβ113Updated 3 months ago
- Evaluate variant calls and its combination with k-mer multiplicityβ66Updated 2 years ago
- A tool for Racon polishing of miniasm assembliesβ74Updated 4 years ago
- β113Updated last month
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assembliesβ63Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomesβ60Updated 3 months ago
- PacBio BAM toolkitβ41Updated last month
- Simple pileup-based variant callerβ87Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi readsβ38Updated last year
- Same species annotation lift over pipeline.β97Updated last year
- Structural Variant Identification Method using Genome Assembliesβ107Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.β47Updated 2 weeks ago
- A list of software for pangenomicsβ107Updated 3 weeks ago
- Toolkit for calling structural variants using short or long readsβ101Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics dataβ45Updated 4 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomesβ56Updated last year
- PGR-TK: Pangenome Research Tool Kitβ98Updated 11 months ago
- β43Updated 8 years ago
- β77Updated last month
- Pipeline to convert a haploid assembly into diploidβ100Updated 2 months ago
- A program for assessing the T2T genome continuityβ69Updated 3 weeks ago
- β61Updated 2 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Tβ¦β54Updated 2 years ago
- A fast tool for hybrid genome assembly of long and short readsβ77Updated 4 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple wayβ103Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequencesβ51Updated 9 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequencesβ48Updated 3 weeks ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.β54Updated 4 months ago