Alternatives and similar repositories for cactus:

Users that are interested in cactus are comparing it to the libraries listed below

• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆485Updated 11 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆567Updated 3 weeks ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆376Updated 8 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆345Updated 2 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆242Updated 3 weeks ago
• pangenome / pggb
  the pangenome graph builder
  ☆406Updated last week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆328Updated 4 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆374Updated 3 weeks ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆573Updated this week
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆433Updated 3 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆348Updated 8 months ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆802Updated 4 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆416Updated 2 months ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆448Updated 3 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆325Updated last year
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆454Updated last year
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆313Updated 7 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆585Updated 8 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆308Updated last year
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆354Updated 4 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆301Updated last year
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆297Updated 5 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆467Updated last month
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆329Updated 2 years ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆384Updated last year
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆353Updated 5 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆215Updated 3 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆281Updated 3 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆477Updated last month
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆276Updated 8 months ago