Alternatives and similar repositories for cactus

Users that are interested in cactus are comparing it to the libraries listed below

• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆689Updated 7 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆483Updated 2 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆428Updated last week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆534Updated last year
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆622Updated last week
• mummer4 / mummer
  Mummer alignment tool
  ☆532Updated 8 months ago
• pangenome / pggb
  the pangenome graph builder
  ☆459Updated 2 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆374Updated last year
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆505Updated 2 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆366Updated 3 months ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆878Updated 5 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆511Updated 2 years ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆394Updated last year
• ablab / quast
  Genome assembly evaluation tool
  ☆468Updated 11 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆369Updated 3 years ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆563Updated last week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last month
• usadellab / Trimmomatic
  ☆270Updated 2 weeks ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆535Updated last month
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆433Updated 3 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆376Updated 8 months ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆694Updated last month
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆320Updated 2 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆365Updated last month
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆623Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆242Updated 4 years ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆392Updated 4 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆419Updated 6 months ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆547Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆664Updated 4 months ago