Alternatives and similar repositories for cactus

Users that are interested in cactus are comparing it to the libraries listed below

• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆672Updated 5 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆527Updated last year
• pangenome / pggb
  the pangenome graph builder
  ☆444Updated 3 weeks ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆422Updated 7 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆498Updated 2 years ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆369Updated last year
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆497Updated last week
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆368Updated 3 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆361Updated last month
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆392Updated last year
• mummer4 / mummer
  Mummer alignment tool
  ☆525Updated 6 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆477Updated last week
• ablab / quast
  Genome assembly evaluation tool
  ☆458Updated 9 months ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆612Updated this week
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆862Updated 3 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆356Updated 2 weeks ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆296Updated this week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆363Updated 2 weeks ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆524Updated last month
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆351Updated 3 weeks ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆608Updated last year
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆368Updated 6 months ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆426Updated last month
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆400Updated 2 months ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆542Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆403Updated 4 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆381Updated 2 months ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆431Updated 3 months ago
• usadellab / Trimmomatic
  ☆263Updated last week