Alternatives and similar repositories for cactus

Users that are interested in cactus are comparing it to the libraries listed below

• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆679Updated 6 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆528Updated last year
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆423Updated 7 months ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆615Updated 3 weeks ago
• pangenome / pggb
  the pangenome graph builder
  ☆449Updated last month
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆504Updated 2 years ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆868Updated 4 months ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆502Updated 3 weeks ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆371Updated last year
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆395Updated last year
• ablab / quast
  Genome assembly evaluation tool
  ☆464Updated 10 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆482Updated last month
• mummer4 / mummer
  Mummer alignment tool
  ☆524Updated 7 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆361Updated 2 months ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆527Updated last week
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆368Updated 3 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆297Updated 3 weeks ago
• usadellab / Trimmomatic
  ☆266Updated last month
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆359Updated last week
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆612Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆409Updated 4 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆369Updated 6 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆378Updated 2 weeks ago
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆406Updated 2 months ago
• lh3 / minigraph
  Sequence-to-graph mapper and graph generator
  ☆456Updated last month
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆317Updated last month
• lh3 / miniasm
  Ultrafast de novo assembly for long noisy reads (though having no consensus step)
  ☆340Updated 2 months ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆689Updated 2 weeks ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆365Updated this week