ComparativeGenomicsToolkit / cactusLinks
Official home of genome aligner based upon notion of Cactus graphs
☆630Updated last week
Alternatives and similar repositories for cactus
Users that are interested in cactus are comparing it to the libraries listed below
Sorting:
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆439Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆710Updated 8 months ago
- An accurate GFF3/GTF lift over pipeline☆514Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆543Updated last year
- Plotting scripts for long read sequencing data☆517Updated last week
- the pangenome graph builder☆468Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline☆368Updated 5 months ago
- Sequence correction provided by ONT Research☆487Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆376Updated last year
- Structural variation caller using third generation sequencing☆626Updated last month
- Mummer alignment tool☆539Updated 10 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Genome assembly evaluation tool☆485Updated last year
- Extensive de-novo TE Annotator☆417Updated 2 months ago
- Synteny and Rearrangement Identifier☆428Updated 7 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆883Updated 7 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆545Updated last week
- TransDecoder source☆299Updated 2 months ago
- Genome annotation with AUGUSTUS☆323Updated 3 months ago
- Rapid haploid variant calling and core genome alignment☆555Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- quality filtering tool for long reads☆380Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆441Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆397Updated 5 months ago
- General tools for genomic analyses.☆380Updated 9 months ago