Official home of genome aligner based upon notion of Cactus graphs
☆685May 26, 2026Updated last week
Alternatives and similar repositories for cactus
Users that are interested in cactus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical Alignment Format☆184May 25, 2026Updated 2 weeks ago
- the pangenome graph builder☆500Mar 31, 2026Updated 2 months ago
- ☆189May 22, 2025Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆249Dec 16, 2025Updated 5 months ago
- Sequence-to-graph mapper and graph generator☆481Aug 11, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- An accurate GFF3/GTF lift over pipeline☆539Aug 1, 2023Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆461Apr 12, 2026Updated last month
- Constructing a pangenome gene graph☆207Aug 11, 2025Updated 9 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆244May 1, 2026Updated last month
- Pangenome-based genome inference☆170Jun 2, 2026Updated last week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 2 weeks ago
- ☆287Dec 29, 2025Updated 5 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆780May 31, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- tools for working with genome variation graphs☆1,321Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆565Feb 14, 2024Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆250May 20, 2026Updated 2 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 3 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆914May 2, 2026Updated last month
- k-mer based assembly evaluation☆343May 21, 2026Updated 2 weeks ago
- ☆101Apr 22, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A genome completeness evaluation tool based on miniprot☆245Sep 18, 2025Updated 8 months ago
- ☆242Jan 24, 2025Updated last year
- alignment to variation graph inducer☆159Apr 11, 2026Updated last month
- Application of pan-genome for population☆121Oct 26, 2025Updated 7 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆248Updated this week
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆217Jan 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆133Mar 20, 2026Updated 2 months ago
- Mummer alignment tool☆560Feb 4, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- High-precision TE Annotator☆160Dec 4, 2025Updated 6 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆295May 28, 2026Updated last week
- Extensive de-novo TE Annotator☆448May 12, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year