Alternatives and similar repositories for cactus

Users that are interested in cactus are comparing it to the libraries listed below

• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆680Updated 6 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆534Updated last year
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆426Updated 8 months ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆504Updated last month
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆482Updated last month
• pangenome / pggb
  the pangenome graph builder
  ☆455Updated 2 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆365Updated 3 months ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆619Updated last month
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆507Updated 2 years ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆373Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆369Updated 3 years ago
• ablab / quast
  Genome assembly evaluation tool
  ☆467Updated 10 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆526Updated 8 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆394Updated last year
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆874Updated 5 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last week
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆364Updated last week
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆618Updated last year
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆366Updated 3 weeks ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆531Updated 3 weeks ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated 11 months ago
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆317Updated last month
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆373Updated 7 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆241Updated 4 years ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆351Updated 2 months ago
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆411Updated 3 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆388Updated 3 months ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆545Updated last year
• usadellab / Trimmomatic
  ☆268Updated last month
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆380Updated this week