A grammar of graphics for comparative genomics
☆782Sep 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for gggenomes
Users that are interested in gggenomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆600Jul 5, 2026Updated 2 months ago
- Gene cluster comparison figure generator☆655Dec 22, 2025Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆356Jul 27, 2026Updated last month
- A list of interesting genome browser and genome visualization programs☆1,107Jul 21, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Synteny and Rearrangement Identifier☆490Jul 1, 2026Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆589Sep 7, 2026Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆557Aug 1, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- the pangenome graph builder☆515Jul 24, 2026Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆500Jul 7, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Align proteins to genomes with splicing and frameshift☆420Jan 5, 2026Updated 8 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆321Sep 15, 2026Updated last week
- A genome visualization python package for comparative genomics☆425Jun 14, 2026Updated 3 months ago
- Rapid comparison and dereplication of genomes☆357Sep 4, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆406Jul 10, 2026Updated 2 months ago
- Creating plasmid maps inside ggplot.☆93Sep 2, 2025Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆707Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,593Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Aug 27, 2026Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆301Nov 28, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- Visualization and annotation of phylogenetic trees☆934Sep 14, 2026Updated last week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆273Jan 24, 2025Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Sep 15, 2026Updated last week
- A fast approximate aligner for long DNA sequences☆291Oct 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 8 months ago
- An R package designed for drawing gene arrow maps☆101Sep 29, 2025Updated 11 months ago
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 5 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆482Sep 14, 2026Updated last week
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆231Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago