thackl / gggenomesLinks
A grammar of graphics for comparative genomics
☆686Updated last week
Alternatives and similar repositories for gggenomes
Users that are interested in gggenomes are comparing it to the libraries listed below
Sorting:
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆553Updated 2 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆508Updated last week
- Tutorials on phylogenetic and phylogenomic inference☆386Updated last year
- A complete pipeline for metagenomic analysis☆421Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆464Updated last month
- Phylogenetic orthology inference for comparative genomics☆782Updated 8 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆361Updated 3 months ago
- 📊 Circular and Rectangular Manhattan Plot☆581Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆633Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆511Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆422Updated 6 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆513Updated 4 months ago
- Gene cluster comparison figure generator☆590Updated 7 months ago
- bioBakery tools for meta'omic profiling☆283Updated last month
- Bioinformatics one liners from Ming Tang☆487Updated 4 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆401Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆532Updated last week
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆449Updated 6 months ago
- A quality control analysis tool for high throughput sequencing data☆517Updated last year
- 🌈 Interactive analysis of metagenomics data☆421Updated 9 months ago
- ☆256Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆324Updated last month
- RAxML Next Generation: faster, easier-to-use and more flexible☆428Updated last week
- microbiome R package☆300Updated 7 months ago
- Download FASTQ files from SRA or ENA repositories.☆338Updated 3 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- A tool to find sequencing data and metadata from public databases.☆580Updated 11 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆351Updated 3 weeks ago
- Analyzing and visualizing KEGG information using the grammar of graphics☆231Updated 3 months ago
- Transcript assembly and quantification for RNA-Seq☆449Updated 3 weeks ago