A grammar of graphics for comparative genomics
☆744Feb 23, 2026Updated last week
Alternatives and similar repositories for gggenomes
Users that are interested in gggenomes are comparing it to the libraries listed below
Sorting:
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆576Jan 13, 2026Updated last month
- Gene cluster comparison figure generator☆636Dec 22, 2025Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆342Apr 7, 2025Updated 10 months ago
- A list of interesting genome browser and genome visualization programs☆1,051Feb 25, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- Build a partitioned pangenome graph from microbial genomes☆294Feb 25, 2026Updated last week
- An updated pipeline for pangenome investigation☆345Jan 15, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆561Jan 13, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆558Feb 14, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆530Aug 1, 2023Updated 2 years ago
- the pangenome graph builder☆481Dec 8, 2025Updated 2 months ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆462Dec 26, 2024Updated last year
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- A genome visualization python package for comparative genomics☆396Dec 6, 2025Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆294Feb 3, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆658Feb 24, 2026Updated last week
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Updated this week
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆340Sep 11, 2025Updated 5 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆500Dec 19, 2025Updated 2 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Visualize and annotate genomic coverage with ggplot2☆271Jan 24, 2025Updated last year
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- Visualization and annotation of phylogenetic trees☆918Jan 12, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Jan 22, 2026Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆890Feb 15, 2026Updated 2 weeks ago
- Create a tree using Mash distances☆182Oct 24, 2023Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆281Nov 28, 2024Updated last year
- Fast genome-wide functional annotation through orthology assignment☆701Jun 18, 2025Updated 8 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆447Dec 16, 2025Updated 2 months ago