A grammar of graphics for comparative genomics
☆776Jul 3, 2026Updated last month
Alternatives and similar repositories for gggenomes
Users that are interested in gggenomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆598Jul 5, 2026Updated last month
- Gene cluster comparison figure generator☆653Dec 22, 2025Updated 7 months ago
- Tool to plot synteny and structural rearrangements between genomes☆352Jul 27, 2026Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,100Jul 21, 2026Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny and Rearrangement Identifier☆482Jul 1, 2026Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆583May 18, 2026Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆308Updated this week
- A genome completeness evaluation tool based on miniprot☆260Jul 29, 2026Updated 2 weeks ago
- An updated pipeline for pangenome investigation☆369Jul 2, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆575Feb 14, 2024Updated 2 years ago
- the pangenome graph builder☆510Jul 24, 2026Updated 2 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆493Jul 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Align proteins to genomes with splicing and frameshift☆414Jan 5, 2026Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- A genome visualization python package for comparative genomics☆416Jun 14, 2026Updated last month
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Creating plasmid maps inside ggplot.☆92Sep 2, 2025Updated 11 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆700Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,589Jul 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Visualization and annotation of phylogenetic trees☆930Apr 29, 2026Updated 3 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆272Jan 24, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆224Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆109Jan 22, 2026Updated 6 months ago
- An R package designed for drawing gene arrow maps☆99Sep 29, 2025Updated 10 months ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆222Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆520Aug 5, 2026Updated last week
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 4 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆477Dec 16, 2025Updated 7 months ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 5 months ago