soedinglab / metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
☆180Updated 6 months ago
Alternatives and similar repositories for metaeuk:
Users that are interested in metaeuk are comparing it to the libraries listed below
- ☆121Updated 5 months ago
- a tool for inferring species tree from sequencing reads☆146Updated 2 months ago
- Pan-genome wide association studies☆176Updated 8 months ago
- sensitive and precise assembly of short sequencing reads☆152Updated 3 months ago
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆132Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated 3 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Antibiotic resistance prediction in minutes☆106Updated 2 months ago
- Pipeline for metabolic annotation of microbial genomes☆142Updated 7 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆180Updated 6 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆139Updated this week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆107Updated last year
- a short-read polishing tool for long-read assemblies☆151Updated 7 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆128Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last week
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- An updated pipeline for pangenome investigation☆275Updated 3 months ago
- CLI tool to annotate genes with KOfam☆73Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆127Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- Similarity networks of biosynthetic gene clusters☆94Updated this week
- fast phage annotation program☆152Updated last week
- Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…☆148Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆196Updated 5 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆127Updated last month
- Nanopore data assembler☆140Updated 2 years ago
- High-quality circular representations of taxonomic and phylogenetic trees☆92Updated 5 months ago