soedinglab / metaeukLinks
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
☆198Updated 2 months ago
Alternatives and similar repositories for metaeuk
Users that are interested in metaeuk are comparing it to the libraries listed below
Sorting:
- Similarity networks of biosynthetic gene clusters☆138Updated 2 weeks ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆152Updated 6 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated this week
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Download files from NCBI Entrez by accession☆129Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- Bioinformatics tool for Locus Visualisation☆125Updated 5 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 9 months ago
- Bioinformatics program inStrain☆177Updated 5 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Open-source usearch☆120Updated 2 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆171Updated 3 weeks ago
- DAS Tool☆159Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆257Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆95Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆112Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆161Updated last year
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆194Updated last week
- A user-friendly workflow for phylogenomics☆221Updated 2 months ago
- Find clustered hits from a BLAST search☆123Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆193Updated last month
- ☆132Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆225Updated 2 weeks ago
- Pan-genome wide association studies☆204Updated last year
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆153Updated last week
- Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…☆161Updated 10 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆126Updated 9 months ago