soedinglab / metaeukLinks
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
☆192Updated this week
Alternatives and similar repositories for metaeuk
Users that are interested in metaeuk are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆126Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated 3 weeks ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆164Updated 8 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- Open-source usearch☆117Updated last week
- Bioinformatics program inStrain☆174Updated 3 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated 7 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆215Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- ☆131Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- A user-friendly workflow for phylogenomics☆219Updated 3 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆220Updated this week
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆167Updated last month
- Systematic search of all known anti-phage systems.☆114Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆244Updated last month
- Bioinformatics tool for Locus Visualisation☆113Updated 3 months ago
- Pan-genome wide association studies☆202Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆168Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆157Updated last year
- Download files from NCBI Entrez by accession☆127Updated 11 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆152Updated last week
- Metagenomic classification of long-read sequencing data☆93Updated last week
- DAS Tool☆156Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆128Updated 7 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- Create a tree using Mash distances☆170Updated last year