MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
☆202Aug 25, 2025Updated 6 months ago
Alternatives and similar repositories for metaeuk
Users that are interested in metaeuk are comparing it to the libraries listed below
Sorting:
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 10 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- Genome annotation with AUGUSTUS☆328Aug 15, 2025Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆383Feb 12, 2026Updated last month
- ☆24Dec 5, 2018Updated 7 years ago
- Tool to estimate genome quality of microbial eukaryotes☆39Aug 1, 2025Updated 7 months ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated 2 months ago
- tiara – a tool for DNA sequence classification☆78Mar 2, 2024Updated 2 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆240Oct 12, 2025Updated 5 months ago
- ☆57Mar 6, 2026Updated 2 weeks ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆78Jun 17, 2024Updated last year
- Fast genome-wide functional annotation through orthology assignment☆708Jun 18, 2025Updated 9 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆227Jan 20, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆323Updated this week
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago
- An updated pipeline for pangenome investigation☆346Jan 15, 2026Updated 2 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Bioinformatics program inStrain☆182Mar 12, 2026Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,996Mar 9, 2026Updated last week
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆211Aug 21, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆236Sep 18, 2025Updated 6 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆612Feb 18, 2026Updated last month
- CLI tool to annotate genes with KOfam☆92Jun 6, 2023Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆449Dec 16, 2025Updated 3 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆219Jan 27, 2025Updated last year
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆585Feb 21, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Mar 8, 2026Updated last week
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago