Evaluation and polishing workflows for T2T genome assemblies
☆147Jul 7, 2025Updated 8 months ago
Alternatives and similar repositories for T2T-Polish
Users that are interested in T2T-Polish are comparing it to the libraries listed below
Sorting:
- Evaluating genome assemblies☆115Mar 3, 2026Updated last week
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 4 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Yet another k-mer analyzer☆161Dec 30, 2025Updated 2 months ago
- A program for assessing the T2T genome continuity☆93Feb 28, 2026Updated last week
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆104Jul 23, 2024Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 4 months ago
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆383Feb 24, 2026Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆164Jul 4, 2025Updated 8 months ago
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆145Nov 24, 2025Updated 3 months ago
- Jasmine: SV Merging Across Samples☆241Dec 20, 2024Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆81Dec 3, 2025Updated 3 months ago
- Long read / genome alignment software☆310Dec 16, 2025Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆47Feb 4, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- Phased assembly variant caller☆134Dec 4, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆559Feb 14, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- An accurate GFF3/GTF lift over pipeline☆530Aug 1, 2023Updated 2 years ago
- Yet another Hi-C scaffolding tool☆172Nov 4, 2024Updated last year
- ☆39Feb 22, 2023Updated 3 years ago
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- Fast genome analysis from unassembled short reads☆313Apr 8, 2024Updated last year
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆206Jul 5, 2025Updated 8 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆163Feb 26, 2025Updated last year