Alternatives and similar repositories for T2T-Polish

Users that are interested in T2T-Polish are comparing it to the libraries listed below

• lh3 / yak
  Yet another k-mer analyzer
  ☆152Updated 3 weeks ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆148Updated 5 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆134Updated 3 weeks ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆141Updated 2 weeks ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆149Updated 2 weeks ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆99Updated last year
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆217Updated this week
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆129Updated 3 years ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆230Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆189Updated 7 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆109Updated 3 months ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆115Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆101Updated 5 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆163Updated this week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated last week
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 9 months ago
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆182Updated 2 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆158Updated 2 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆105Updated 6 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆225Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆162Updated 3 years ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆126Updated 3 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆145Updated last year
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆111Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆233Updated last year