Find all significant local alignments between reads
☆141Jul 3, 2024Updated last year
Alternatives and similar repositories for DALIGNER
Users that are interested in DALIGNER are comparing it to the libraries listed below
Sorting:
- The Dazzler Data Base☆36Feb 17, 2025Updated last year
- Bax File Decoder and Data Compressor☆34Jan 3, 2024Updated 2 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆352Jul 19, 2025Updated 7 months ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 8 years ago
- Code for nanopore paper☆33Jun 26, 2015Updated 10 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Jun 27, 2022Updated 3 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆218Aug 21, 2024Updated last year
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 8 years ago
- alignment to variation graph inducer☆157Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- ☆285Dec 29, 2025Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- A single molecule sequence assembler for genomes large and small.☆695Feb 24, 2026Updated last week
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- SIMD partial order alignment tool/library☆171Sep 21, 2025Updated 5 months ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 7 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆338Feb 22, 2026Updated last week
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 6 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆211Aug 21, 2024Updated last year
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Sep 20, 2017Updated 8 years ago
- ☆16Jan 10, 2022Updated 4 years ago