thegenemyers / DALIGNER
Find all significant local alignments between reads
☆141Updated 8 months ago
Alternatives and similar repositories for DALIGNER:
Users that are interested in DALIGNER are comparing it to the libraries listed below
- Bayesian genotyper for structural variants☆128Updated 4 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆84Updated 6 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 2 months ago
- Ultra-fast de novo assembler using long noisy reads☆132Updated 4 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆105Updated 7 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆137Updated 2 weeks ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆222Updated 6 months ago
- ABRA2☆92Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Updated 5 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆91Updated last year
- ☆89Updated 3 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 7 months ago
- Comparison of multiple long read datasets☆124Updated 3 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 3 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Structural Variant Identification Method using Long Reads☆165Updated 3 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago